Hg_chrom5_TN10mRNA_10525
Organism: Heterodera glycines Gene Locus: chr5:8069336-8074050 Feature type: polypeptideProtein Sequence
Length: 570
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.428 | 0.898 | 0.957 | 0.726 | 0.702 | 1.215 | 0.982 | 1.053 | 0.819 | 1.541 | 0.744 | 1.445 | 1.267 | 1.215 | 1.003 | 0.652 | 0.46 | 1.143 | 1.08 | 0.774 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9907
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RRAIADNESARQKRVKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.215
|
0.330
|
0.046
|
0.344
|
0.615
|
0.377
|
0.316
|
0.027
|
0.185
|
0.106
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009942
|
1.000
|
1.000
|
Hsc_gene_14286.t1
|
Hsc_gene_14286.t1
|
— |
Q9U217.1 Monoglyceride lipase faah-4 [Caenorhabditis elegans]
|
KAF7632316.1 Amidase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.748|GO:0110165_0.738|GO:0008150_0.732|GO:0003674_0.627|GO:0009987_0.562|GO:0016020_0.539|GO:0003824_0.527|GO:0005622_0.516
|
IPR020556+199-230+|IPR023631+71-555+|IPR036928+10-570_37-564+|IPR052096+12-566+
|
— |
PF01425+71-555+Amidase
|
G3DSA:3.90.1300.10:FF:000003+10-570+Amidase_signature_enzyme
|
PTHR45847+12-566+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-570
|
6c6g_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.741
|
62014.660
|
7.768
|
8.000
|
21.404
|
10.702
|
37.368
|
62.632
|
11.930
|
9.474
|
52.982
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
lightcyan
|
1680.898
|
2764.745
|
1706.185
|
1473.692
|
1866.494
|
2033.191
|
2945.366
|
1680.210
|
553.810
|
1512.363
|
1101.554
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.925
|
-1.045
|
-0.103
|
0.309
|
— |
0.545
|
-0.381
|
0.953
|
— | — | — | — | — |
No JSON data available for plots.