Hg_chrom5_TN10mRNA_10527
Organism: Heterodera glycines Gene Locus: chr5:8082833-8085572 Feature type: polypeptideProtein Sequence
Length: 374
(Signal peptide: 1-36)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.244 | 0.435 | 0.438 | 1.752 | 0.401 | 0.686 | 0.477 | 2.005 | 1.545 | 1.698 | 0.405 | 0.944 | 2.302 | 1.543 | 1.037 | 0.955 | 0.701 | 0.77 | 2.879 | 0.55 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9909
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
endoplasmic_reticulum
|
chloroplast
|
KKRK,KRIR,KRKEK
|
— | — |
50-85
|
0.963
|
1-36
|
0.806
|
0.890
|
7.000
|
7.000
|
0.177
|
0.106
|
0.010
|
0.097
|
0.779
|
0.504
|
0.577
|
0.006
|
0.261
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009943
|
1.000
|
1.000
|
Hsc_gene_14284.t1
|
Hsc_gene_14284.t1;Hsc_gene_14284.t2
|
— |
Q96FM1.2 Post-GPI attachment to proteins factor 3 [Homo sapiens]
|
KAF7638596.1 Post-GPI attachment to proteins factor 3 [Meloidogyne graminicola]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006506
|
GO:0008150_0.830|GO:0005575_0.626|GO:0110165_0.626|GO:0009987_0.619|GO:0003674_0.596|GO:0016020_0.593
|
IPR007217+18-363_79-357+
|
— |
PF04080+79-357+Per1-like_family
|
— |
PTHR13148+18-363+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-374
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
42212.010
|
8.543
|
18.500
|
16.578
|
17.914
|
32.086
|
67.914
|
11.765
|
4.813
|
48.128
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
brown
|
200.099
|
84.927
|
227.321
|
159.904
|
138.611
|
443.304
|
340.640
|
283.154
|
208.931
|
89.539
|
140.707
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.191
|
0.775
|
-0.398
|
— |
1.692
|
-0.371
|
-0.755
|
0.409
|
— | — | — |
9.423
|
— |