Hg_chrom5_TN10mRNA_10530
Organism: Heterodera glycines Gene Locus: chr5:8097378-8103884 Feature type: polypeptideProtein Sequence
Length: 749
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.978 | 0.838 | 1.165 | 0.921 | 0.69 | 1.095 | 0.763 | 1.535 | 0.801 | 1.01 | 0.668 | 1.414 | 1.483 | 1.823 | 1.172 | 1.125 | 0.897 | 0.87 | 0.616 | 0.785 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9912
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL,KRPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.807
|
0.091
|
0.010
|
0.421
|
0.102
|
0.074
|
0.050
|
0.028
|
0.068
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004179
|
1.000
|
2.000
|
Hsc_gene_14281.t1;Hsc_gene_14281.t2
|
Hsc_gene_14281.t2
|
— | — |
CDJ93844.1 Phytanoyl-CoA hydroxylase-interacting [Haemonchus contortus]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR042868+435-713+|IPR045545+471-676+
|
— |
PF19281+471-676+Phytanoyl-CoA_hydroxylase-interacting_protein_C-terminus
|
— |
PTHR15698+435-713+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
150-303
|
2.000
|
1-149;304-749
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.820
|
82567.590
|
7.156
|
8.500
|
23.765
|
11.883
|
44.993
|
55.007
|
13.218
|
10.547
|
56.075
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
740.581
|
796.271
|
621.209
|
901.771
|
1106.764
|
896.268
|
1767.484
|
375.206
|
266.074
|
616.124
|
466.102
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.589
|
— |
0.647
|
0.264
|
-0.290
|
0.990
|
-1.362
|
2.378
|
— | — |
1.692
|
— | — |
No JSON data available for plots.