Hg_chrom5_TN10mRNA_10532
Organism: Heterodera glycines Gene Locus: chr5:8112246-8116329 Feature type: polypeptideProtein Sequence
Length: 436
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.72 | 0.587 | 0.876 | 0.316 | 1.147 | 1.235 | 0.519 | 0.688 | 1.835 | 1.302 | 0.869 | 2.563 | 1.529 | 1.014 | 1.03 | 0.786 | 0.978 | 0.799 | 2.823 | 1.147 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9914
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.868
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
QKRKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.064
|
0.075
|
0.003
|
0.134
|
0.486
|
0.288
|
0.511
|
0.002
|
0.719
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009946
|
1.000
|
1.000
|
Hsc_gene_14277.t1
|
Hsc_gene_14277.t1
|
— |
Q19978.3 Bestrophin homolog 14 [Caenorhabditis elegans]
|
KAI1715770.1 bestrophin, RFP-TM, chloride channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005254
|
GO:0008150_0.959|GO:0009987_0.917|GO:0003674_0.877|GO:0051179_0.847|GO:0006810_0.840|GO:0051234_0.840|GO:0055085_0.760|GO:0006811_0.735|GO:0005215_0.705|GO:0022857_0.705|GO:0005575_0.700|GO:0110165_0.700|GO:0015267_0.689|GO:0022803_0.689|GO:0016020_0.659|GO:0034220_0.637|GO:0015075_0.598|GO:0005216_0.594|GO:0006820_0.586|GO:0098656_0.584|GO:0022836_0.577|GO:0071944_0.574|GO:0022834_0.570|GO:0005886_0.567|GO:0008509_0.567|GO:0005253_0.566|GO:0098660_0.525
|
IPR000615+1-363+|IPR021134+8-302+
|
— |
PF01062+8-302+Bestrophin,_RFP-TM,_chloride_channel
|
— |
PTHR10736+1-363+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
384-436
|
1.000
|
1-383
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
50970.300
|
6.267
|
-1.000
|
23.853
|
14.450
|
42.661
|
57.339
|
12.156
|
11.697
|
40.826
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
magenta
|
491.191
|
296.602
|
1627.035
|
293.786
|
343.289
|
622.278
|
154.392
|
1787.940
|
49.548
|
189.803
|
129.694
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.228
|
-0.151
|
-2.362
|
0.194
|
0.873
|
-2.001
|
1.420
|
-3.391
|
— | — | — | — | — |
No JSON data available for plots.