Hg_chrom5_TN10mRNA_10536
Organism: Heterodera glycines Gene Locus: chr5:8144841-8147644 Feature type: polypeptideProtein Sequence
Length: 221
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.789 | 1.158 | 0.823 | 1.404 | 1.207 | 0.812 | 0.646 | 2.036 | 1.106 | 1.284 | 0.617 | 1.597 | 1.257 | 1.044 | 1.2 | 0.905 | 0.742 | 0.891 | 1.392 | 1.198 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9918
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|nucleus
|
— | — | — | — |
50-82
|
0.950
|
— | — |
0.000
|
— | — |
0.518
|
0.486
|
0.012
|
0.635
|
0.107
|
0.138
|
0.093
|
0.324
|
0.124
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009949
|
1.000
|
1.000
|
Hsc_gene_14271.t1
|
Hsc_gene_14271.t1
|
— |
Q5RDQ3.1 AMMECR1-like protein [Pongo abelii]
|
KAF7626918.1 AMMECR1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.847|GO:0110165_0.844|GO:0005622_0.786|GO:0005737_0.769|GO:0016020_0.761|GO:0043226_0.736|GO:0043229_0.712|GO:0043227_0.711|GO:0043231_0.710|GO:0005634_0.609
|
IPR002733+17-212_31-200+|IPR023473+23-215_28-205+|IPR027485+18-148+|IPR036071+27-216+
|
— |
PF01871+31-200+AMMECR1
|
— |
PTHR13016+23-215+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-221
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
25261.860
|
6.570
|
0.500
|
25.792
|
14.480
|
44.796
|
55.204
|
14.027
|
11.765
|
47.964
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
916.937
|
363.411
|
576.949
|
744.551
|
1017.593
|
1564.344
|
1017.465
|
1397.689
|
411.796
|
1197.001
|
860.485
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.439
|
0.898
|
0.475
|
0.419
|
0.635
|
-0.610
|
-0.269
|
-0.314
|
— | — | — | — | — |
No JSON data available for plots.