Hg_chrom5_TN10mRNA_10542
Organism: Heterodera glycines Gene Locus: chr5:8167809-8169103 Feature type: polypeptideProtein Sequence
Length: 139
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.753 | 1.171 | 1.046 | 0.496 | 1.918 | 0.184 | 0.685 | 0.36 | 0.48 | 0.681 | 1.962 | 1.693 | 1.799 | 0.138 | 0.587 | 1.028 | 1.415 | 1.199 | 1.66 | 1.058 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9923
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.923
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.305
|
0.530
|
0.126
|
0.802
|
0.297
|
0.108
|
0.460
|
0.041
|
0.313
|
0.419
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009952
|
1.000
|
1.000
|
Hsc_gene_14265.t1
|
Hsc_gene_14250.t1;Hsc_gene_14265.t1
|
— |
O01812.1 Fatty acid-binding protein homolog 6 [Caenorhabditis elegans]
|
KAF7633260.1 Lipocln_cytosolic_FA-bd_dom domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0008150_0.711|GO:0005575_0.706|GO:0110165_0.683|GO:0009987_0.633|GO:0003674_0.589|GO:0005622_0.570|GO:0005488_0.539
|
IPR000463+5-27_7-24_66-82_117-137+|IPR012674+1-137_4-138+|IPR031259+1-136+
|
— |
PF14651+5-99+Lipocalin_/_cytosolic_fatty-acid_binding_protein_family
|
G3DSA:2.40.128.20:FF:000001+1-138+Fatty_acid-binding_protein,_adipocyte
|
PTHR11955+1-136+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-139
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.530
|
15929.950
|
5.376
|
-1.500
|
33.813
|
12.950
|
55.396
|
44.604
|
16.547
|
17.266
|
48.921
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
skyblue
|
10371.839
|
6400.620
|
5422.902
|
2029.021
|
5900.519
|
10168.943
|
40943.925
|
15815.260
|
4332.838
|
9621.720
|
7355.056
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.468
|
-1.794
|
-1.310
|
1.509
|
0.799
|
2.021
|
0.535
|
1.515
|
— | — | — | — | — |
No JSON data available for plots.