Hg_chrom5_TN10mRNA_10545
Organism: Heterodera glycines Gene Locus: chr5:8197998-8199128 Feature type: polypeptideProtein Sequence
Length: 188
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.495 | 0.619 | 0.58 | 0.917 | 1.418 | 0.955 | 1.583 | 1.064 | 1.537 | 1.006 | 1.128 | 1.564 | 1.034 | 1.125 | 0.76 | 0.608 | 0.872 | 0.725 | 0.818 | 1.877 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9926
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.378
|
0.395
|
0.120
|
0.311
|
0.309
|
0.279
|
0.155
|
0.025
|
0.369
|
0.540
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009953
|
1.000
|
1.000
|
Hsc_gene_14262.t1
|
Hsc_gene_14262.t1
|
— |
P25793.1 Cathepsin B-like cysteine proteinase 2 [Haemonchus contortus]
|
XP_030078247.1 cathepsin L1-like [Microcaecilia unicolor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0005575_0.776|GO:0110165_0.770|GO:0008150_0.758|GO:0003674_0.639|GO:0005622_0.614|GO:0005737_0.614|GO:0016020_0.549|GO:0009987_0.528|GO:0003824_0.524|GO:0043226_0.521|GO:0043229_0.513|GO:0008152_0.509
|
IPR000668+2-181_11-179+|IPR013128+11-174+|IPR025660+128-138+|IPR038765+12-178+
|
SM00645+2-181+
|
PF00112+11-179+Papain_family_cysteine_protease
|
— |
PTHR12411+11-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-188
|
6row_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.780
|
20928.960
|
6.839
|
1.000
|
25.000
|
13.298
|
40.957
|
59.043
|
13.298
|
11.702
|
46.277
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
blue
|
359.955
|
0.762
|
1.142
|
1.973
|
2.386
|
79.695
|
28.818
|
1.095
|
0.000
|
1531.350
|
875.057
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
5.110
|
-1.455
|
-6.285
|
4.858
|
-11.367
|
— |
-8.702
|
— | — |
No JSON data available for plots.