Hg_chrom5_TN10mRNA_10546
Organism: Heterodera glycines Gene Locus: chr5:8200806-8208212 Feature type: polypeptideProtein Sequence
Length: 485
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.671 | 1.055 | 0.9 | 1.138 | 1.1 | 1.057 | 0.736 | 2.165 | 1.283 | 1.31 | 0.656 | 1.455 | 1.546 | 0.595 | 1.136 | 1.06 | 0.507 | 1.281 | 0.952 | 1.031 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9927
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.468
|
0.348
|
0.051
|
0.687
|
0.161
|
0.266
|
0.224
|
0.017
|
0.130
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003776
|
2.000
|
1.000
|
Hsc_gene_14261.t1
|
Hsc_gene_14261.t1;Hsc_gene_14261.t2
|
— |
A1T726.1 Aldo-keto reductase Mvan_2161 [Mycolicibacterium vanbaalenii PYR-1]
|
KAI6238147.1 Oxidoreductase [Aphelenchoides fujianensis]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.804|GO:0003674_0.715|GO:0005575_0.668|GO:0110165_0.664|GO:0003824_0.631|GO:0008152_0.592|GO:0005622_0.586|GO:0009987_0.577|GO:0005737_0.545|GO:0044238_0.523|GO:0016020_0.518|GO:0016491_0.509
|
IPR020471+150-410_179-203_305-322_339-368_384-408+|IPR023210+171-421+|IPR036812+139-475_152-420+
|
— |
PF00248+171-421+Aldo/keto_reductase_family
|
— |
PTHR43827+150-410+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-485
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
55224.290
|
6.688
|
2.500
|
25.773
|
14.639
|
44.948
|
55.052
|
14.227
|
11.546
|
46.804
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1646.861
|
1715.981
|
2793.921
|
1272.362
|
486.120
|
127.862
|
92.272
|
826.036
|
1613.340
|
3252.054
|
2549.748
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.474
|
-0.569
|
-1.026
|
-1.419
|
-1.913
|
-0.461
|
2.587
|
-3.021
|
— | — |
-2.456
|
— | — |
No JSON data available for plots.