Hg_chrom5_TN10mRNA_10547
Organism: Heterodera glycines Gene Locus: chr5:8209706-8211572 Feature type: polypeptideProtein Sequence
Length: 318
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.731 | 1.17 | 0.743 | 0.759 | 0.472 | 1.209 | 0.412 | 1.887 | 0.978 | 1.657 | 0.619 | 2.22 | 2.184 | 0.968 | 1.412 | 0.943 | 0.876 | 0.81 | 1.935 | 1.017 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9928
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — |
90-111
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.781
|
0.373
|
0.067
|
0.391
|
0.212
|
0.030
|
0.097
|
0.174
|
0.073
|
0.321
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000050
|
16.000
|
7.000
|
Hsc_gene_11413.t1;Hsc_gene_11455.t1;Hsc_gene_20685.t1;Hsc_gene_2731.t1;Hsc_gene_3115.t1;Hsc_gene_595.t1;Hsc_gene_7820.t1
|
— | — | — |
ADM16639.1 transposase, partial [Meloidogyne javanica]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR018289+144-235+
|
— |
PF10551+144-235+MULE_transposase_domain
|
— |
PTHR47160+137-301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-318
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.745
|
37265.390
|
9.849
|
19.000
|
21.698
|
17.610
|
43.396
|
56.604
|
14.780
|
6.918
|
43.396
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
134.561
|
125.698
|
309.651
|
120.985
|
31.247
|
14.187
|
7.823
|
193.365
|
1.382
|
286.561
|
164.341
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.072
|
— |
-1.247
|
-1.979
|
-1.128
|
— |
3.674
|
-4.486
|
-6.340
|
6.785
|
— | — |
7.636
|
No JSON data available for plots.