Hg_chrom5_TN10mRNA_10550
Organism: Heterodera glycines Gene Locus: chr5:8223658-8225117 Feature type: polypeptideProtein Sequence
Length: 64
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.908 | 0.0 | 0.852 | 0.0 | 1.823 | 2.003 | 1.674 | 0.0 | 0.347 | 1.056 | 4.498 | 1.838 | 0.434 | 0.3 | 0.319 | 0.446 | 0.256 | 0.473 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9931
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKDDKVLTEEDVEFKKKQM,KKQMEEQKKLKEAAQKAAEKGGKLGGGIKKSGKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.444
|
0.114
|
0.013
|
0.721
|
0.432
|
0.024
|
0.282
|
0.001
|
0.275
|
0.254
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q20588.1 Translation machinery-associated protein 7 homolog [Caenorhabditis elegans]
|
KAH7728403.1 coiled-coil domain-containing protein 72-like protein [Aphelenchus avenae]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.947|GO:0110165_0.946|GO:0008150_0.891|GO:0005622_0.881|GO:0043226_0.848|GO:0043229_0.848|GO:0009987_0.845|GO:0016020_0.819|GO:0005737_0.783|GO:0043227_0.774|GO:0043231_0.761|GO:0008152_0.746|GO:0009058_0.746|GO:0009059_0.746|GO:0010467_0.746|GO:0043170_0.746|GO:0044237_0.746|GO:0044249_0.746|GO:0044238_0.710|GO:0006412_0.698|GO:0006414_0.698|GO:0019538_0.698|GO:0002181_0.679|GO:0005634_0.634
|
IPR015157+1-64_3-64+
|
— |
PF09072+3-64+Translation_machinery_associated_TMA7
|
— |
PTHR28632+1-64+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-64
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.942
|
7027.260
|
10.753
|
10.000
|
46.875
|
1.562
|
59.375
|
40.625
|
31.250
|
15.625
|
35.938
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1568.360
|
912.233
|
1238.045
|
1679.424
|
1843.785
|
1877.519
|
1430.132
|
1246.729
|
1889.092
|
1609.304
|
1729.213
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.211
|
0.744
|
0.549
|
0.103
|
— |
-0.382
|
-0.695
|
0.341
|
— | — | — | — | — |
No JSON data available for plots.