Hg_chrom5_TN10mRNA_10556
Organism: Heterodera glycines Gene Locus: chr5:8318668-8326163 Feature type: polypeptideProtein Sequence
Length: 676
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.324 | 0.482 | 0.592 | 0.102 | 1.553 | 2.048 | 0.616 | 0.74 | 0.197 | 0.5 | 1.031 | 0.957 | 0.411 | 0.91 | 2.566 | 2.029 | 1.067 | 0.605 | 1.024 | 0.348 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9936
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.954
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRK,APKGKASA,RKKKADEEAEKKKMS,KKKMSEMNFERWKRE,RRQQTVRNASAPSMRQRRD,RKAAEKRAAETLAEQEKRK,KRAAETLAEQEKRKKEEKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.273
|
0.242
|
0.056
|
0.761
|
0.024
|
0.022
|
0.085
|
0.217
|
0.209
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009956
|
1.000
|
1.000
|
Hsc_gene_14233.t1
|
— | — | — |
CAD2205000.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000281|GO:0051225
|
— |
IPR026106+20-617+
|
— | — | — |
PTHR14739+20-617+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-676
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.769
|
75416.870
|
11.157
|
51.000
|
33.432
|
5.473
|
64.201
|
35.799
|
20.858
|
12.574
|
51.627
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
220.903
|
382.300
|
134.333
|
60.331
|
51.316
|
69.861
|
106.529
|
51.363
|
4.112
|
642.354
|
368.822
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.741
|
-2.801
|
-1.044
|
— |
0.461
|
0.620
|
-0.549
|
1.196
|
-7.407
|
— | — | — | — |
No JSON data available for plots.