Hg_chrom5_TN10mRNA_10559
Organism: Heterodera glycines Gene Locus: chr5:8338115-8340821 Feature type: polypeptideProtein Sequence
Length: 136
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.598 | 0.855 | 1.203 | 0.507 | 1.716 | 0.377 | 0.875 | 0.0 | 1.307 | 0.696 | 2.117 | 1.73 | 1.634 | 0.141 | 0.6 | 0.735 | 1.326 | 1.114 | 1.697 | 1.081 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9939
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.295
|
0.460
|
0.153
|
0.782
|
0.291
|
0.117
|
0.420
|
0.038
|
0.334
|
0.474
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009957
|
1.000
|
1.000
|
Hsc_gene_14249.t1
|
Hsc_gene_14249.t1
|
— |
O01814.1 Fatty acid-binding protein homolog 5 [Caenorhabditis elegans]
|
KAF7633260.1 Lipocln_cytosolic_FA-bd_dom domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0005575_0.722|GO:0008150_0.722|GO:0110165_0.716|GO:0009987_0.637|GO:0005622_0.610|GO:0003674_0.570|GO:0043226_0.516|GO:0005737_0.509|GO:0016020_0.506
|
IPR000463+5-27_7-24_64-80_115-135+|IPR000566+6-133+|IPR012674+2-135_4-135+|IPR031259+3-133+
|
— |
PF00061+6-133+Lipocalin_/_cytosolic_fatty-acid_binding_protein_family
|
— |
PTHR11955+3-133+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-136
|
6ljx_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
15606.860
|
6.420
|
0.000
|
33.824
|
11.765
|
52.206
|
47.794
|
16.912
|
16.912
|
45.588
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
15627.314
|
41.033
|
5176.718
|
13442.619
|
65184.464
|
44628.118
|
11765.790
|
6933.276
|
1716.347
|
11892.731
|
7531.423
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.751
|
8.220
|
1.484
|
2.246
|
-0.533
|
-1.912
|
-2.787
|
0.905
|
-2.896
|
3.134
|
2.618
|
— | — |
No JSON data available for plots.