SCN Proteipedia

Hg_chrom5_TN10mRNA_10560

Organism: Heterodera glycines Gene Locus: chr5:8342554-8345254 Feature type: polypeptide

Protein Sequence

Length: 233

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.298	1.298	1.171	1.184	1.431	1.651	0.46	1.931	0.858	0.464	1.496	1.767	0.715	0.33	1.401	0.429	1.126	1.04	0.66	0.505	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9940	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKEAKFVNFLQNSLRIRDR,KRANKMHQELSQVVPMKRK	—	—	—	—	—	—	0.000	—	—	0.883	0.061	0.010	0.330	0.060	0.031	0.075	0.014	0.055	0.200

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009958	1.000	1.000	Hsc_gene_14252.t1	—	—	Q6AYK5.1 Cell growth-regulating nucleolar protein [Rattus norvegicus]	KAF7629173.1 zf-LYAR domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677	GO:0005575_0.884\|GO:0110165_0.881\|GO:0005622_0.839\|GO:0043226_0.777\|GO:0008150_0.774\|GO:0016020_0.773\|GO:0043229_0.757\|GO:0009987_0.714\|GO:0043227_0.704\|GO:0043231_0.695\|GO:0043228_0.692\|GO:0043232_0.692\|GO:0005634_0.683\|GO:0008152_0.652\|GO:0065007_0.649\|GO:0050789_0.639\|GO:0044237_0.627\|GO:0044238_0.627\|GO:0009058_0.623\|GO:0050794_0.623\|GO:0031974_0.618\|GO:0043233_0.618\|GO:0043170_0.616\|GO:0070013_0.616\|GO:0006139_0.613\|GO:0009059_0.611\|GO:0010467_0.611\|GO:0044249_0.611\|GO:0031981_0.610\|GO:0071840_0.600\|GO:0019222_0.590\|GO:0034654_0.590\|GO:0090304_0.586\|GO:0141187_0.583\|GO:0031323_0.581\|GO:0016070_0.580\|GO:0048518_0.577\|GO:0060255_0.577\|GO:0080090_0.574\|GO:0032774_0.573\|GO:0048519_0.573\|GO:0009889_0.571\|GO:0031326_0.571\|GO:0048522_0.571\|GO:0005730_0.566\|GO:0010556_0.566\|GO:0010468_0.564\|GO:0048523_0.559\|GO:0019219_0.556\|GO:0006351_0.554\|GO:0051252_0.553\|GO:0006355_0.547\|GO:0009892_0.547\|GO:0010605_0.547\|GO:2001141_0.547\|GO:0031324_0.544\|GO:0009890_0.542\|GO:0010558_0.542\|GO:0031327_0.542\|GO:0006366_0.539\|GO:0045934_0.537\|GO:0051253_0.537\|GO:0045892_0.536\|GO:1902679_0.536\|GO:0006357_0.535\|GO:0000122_0.530	IPR014898+30-57+\|IPR036236+1-27_29-58+\|IPR039999+1-225+	—	PF08790+30-57+LYAR-type_C2HC_zinc_finger	G3DSA:1.10.10.2100:FF:000002+91-137+cell_growth-regulating_nucleolar_protein-like\|G3DSA:3.30.1490.490:FF:000001+1-50+cell_growth-regulating_nucleolar_protein-like	PTHR13100+1-225+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	142-233	1.000	1-141	6zmo_CE	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.520	26551.930	8.309	8.500	35.622	9.013	57.511	42.489	20.601	15.021	48.927

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	lightgreen	847.103	1079.038	626.506	977.146	1032.924	776.474	768.822	447.747	884.920	901.639	894.473

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.015	-0.280	0.751	—	-0.397	—	-0.899	0.923	—	—	—	—	—

No JSON data available for plots.

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