SCN Proteipedia

Hg_chrom5_TN10mRNA_10561

Organism: Heterodera glycines Gene Locus: chr5:8352300-8360516 Feature type: polypeptide

Protein Sequence

Length: 813

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.701	1.201	0.671	1.442	0.554	0.599	0.703	1.292	1.203	1.18	0.54	1.447	1.298	0.946	1.255	1.775	1.492	0.783	1.419	0.687	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9941	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.062	0.075	0.030	0.131	0.195	0.279	0.303	0.020	0.765	0.055

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009959	1.000	1.000	Hsc_gene_14254.t1	—	—	P41849.3 Ligand-gated ion channel 50 [Caenorhabditis elegans]	KAI1728037.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0008150_0.975\|GO:0009987_0.939\|GO:0005575_0.908\|GO:0110165_0.885\|GO:0065007_0.847\|GO:0071944_0.837\|GO:0050789_0.828\|GO:0005886_0.813\|GO:0016020_0.813\|GO:0051179_0.811\|GO:0051234_0.808\|GO:0006810_0.806\|GO:0003674_0.801\|GO:0023052_0.780\|GO:0007154_0.774\|GO:0055085_0.729\|GO:0006811_0.710\|GO:0050794_0.707\|GO:0034220_0.704\|GO:0050896_0.680\|GO:0005215_0.630\|GO:0005216_0.630\|GO:0015075_0.630\|GO:0015267_0.630\|GO:0022803_0.630\|GO:0022857_0.630\|GO:0060089_0.630\|GO:0038023_0.629\|GO:0051716_0.623\|GO:0022836_0.612\|GO:0030054_0.593\|GO:0015276_0.587\|GO:0022834_0.587\|GO:0032501_0.576\|GO:0007267_0.575\|GO:0007165_0.561\|GO:0005230_0.545\|GO:0045202_0.543\|GO:0098916_0.534\|GO:0099536_0.534\|GO:0099537_0.534\|GO:0007268_0.529\|GO:0098660_0.523\|GO:0004888_0.518\|GO:0006820_0.509\|GO:0006821_0.507\|GO:0015698_0.507\|GO:0098656_0.506	IPR006028+500-520_526-547_560-581_785-805+\|IPR006029+505-802+\|IPR006201+298-691_336-352_371-382_417-431_491-503+\|IPR006202+294-496+\|IPR018000+417-431+\|IPR036719+497-806+\|IPR036734+284-494_293-496+\|IPR038050+495-674+	—	PF02931+294-496+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+505-802+Neurotransmitter-gated_ion-channel_transmembrane_region	G3DSA:2.70.170.10:FF:000035+286-493+Ligand-Gated_ion_Channel	PTHR18945+298-691+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-86;634-710	2.000	87-633;711-813	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.945	89766.440	8.671	32.500	19.311	11.439	48.339	51.661	12.300	7.011	56.581

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	494.583	788.295	963.629	439.932	177.898	257.327	101.448	1029.306	27.841	733.733	431.208

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.979	-1.022	-1.339	0.547	-1.332	1.901	-3.201	-4.841	4.190	—	—	—

No JSON data available for plots.

Back to Browser