SCN Proteipedia

Hg_chrom5_TN10mRNA_10562

Organism: Heterodera glycines Gene Locus: chr5:8360934-8372544 Feature type: polypeptide

Protein Sequence

Length: 1,383

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.009	0.774	0.723	0.773	0.807	1.131	0.663	1.591	1.044	1.485	0.504	1.446	1.285	0.973	1.166	1.25	1.008	1.183	0.612	1.0	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9942	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	lysosome_vacuole	—	KKHK,KKQTTGVINQLNRAKIR	33-72	0.988	9-37	0.995	—	—	0.001	—	—	0.073	0.101	0.047	0.149	0.586	0.747	0.589	0.038	0.414	0.015

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004181	1.000	2.000	Hsc_gene_14255.t1;Hsc_gene_14255.t2	Hsc_gene_14255.t1;Hsc_gene_14255.t2	—	Q27533.2 Probable cation-transporting ATPase W08D2.5 [Caenorhabditis elegans]	KAI1732407.1 e1-E2 ATPase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0005215\|GO:0005524\|GO:0015662\|GO:0016020\|GO:0016887\|GO:0019829\|GO:0140358	GO:0005575_0.941\|GO:0110165_0.941\|GO:0016020_0.898\|GO:0071944_0.892\|GO:0005886_0.884\|GO:0008150_0.882\|GO:0009987_0.813\|GO:0051179_0.736\|GO:0051234_0.720\|GO:0006810_0.706\|GO:0003674_0.636\|GO:0005622_0.599\|GO:0055085_0.570\|GO:0043226_0.551\|GO:0043229_0.525\|GO:0043227_0.512\|GO:0005737_0.511	IPR001757+574-689_771-914_1017-1133+\|IPR004014+332-386+\|IPR006544+195-1322_197-1293+\|IPR008250+429-550+\|IPR018303+652-658+\|IPR023214+867-1082+\|IPR023298+331-1309+\|IPR023299+689-877_698-866+\|IPR036412+646-1096+\|IPR044492+631-1094+\|IPR047819+195-307+\|IPR047821+342-1215+	—	PF00122+428-629+E1-E2_ATPase\|PF00690+332-386+Cation_transporter/ATPase,_N-terminus\|PF12409+195-307+P5-type_ATPase_cation_transporter\|PF13246+732-813+Cation_transport_ATPase_(P-type)	G3DSA:1.20.1110.10:FF:000023+525-665+Cation-transporting_ATPase\|G3DSA:3.40.1110.10:FF:000026+702-867+Cation-transporting_ATPase\|G3DSA:3.40.50.1000:FF:000068+868-1079+Cation-transporting_ATPase	PTHR45630+195-1322+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-188;1381-1383	1.000	189-1380	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.724	153240.100	7.737	25.000	21.041	12.003	43.673	56.327	12.220	8.821	51.555

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	2048.450	3069.956	2084.468	2175.157	2005.177	2468.550	3111.598	1958.991	1206.267	1729.556	1505.289

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.787	-0.634	0.169	-0.149	0.315	0.344	-0.440	0.810	—	—	—	—	—

No JSON data available for plots.

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