SCN Proteipedia

Hg_chrom5_TN10mRNA_10567

Organism: Heterodera glycines Gene Locus: chr5:8387031-8406056 Feature type: polypeptide

Protein Sequence

Length: 1,523

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.87	1.176	1.17	0.702	1.138	1.313	0.719	1.28	0.948	1.216	0.895	1.506	1.24	0.707	1.3	1.182	0.818	0.875	0.808	0.618	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9946	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_Clustered	0.901

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KKWK,RKKEKSRG,RRQLKVSKHELSRTKER,RREVATREETLRELPKLKR	60-103	0.964	27-69	0.966	—	—	0.000	—	—	0.245	0.155	0.051	0.609	0.258	0.442	0.477	0.047	0.431	0.058

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009960	1.000	1.000	Hsc_gene_14230.t1	Hsc_gene_14230.t1	—	Q23658.6 Calcium-dependent secretion activator [Caenorhabditis elegans]	KAI1726251.1 protein-tyrosine phosphatase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016079\|GO:1990504	GO:0005575_0.933\|GO:0110165_0.925\|GO:0008150_0.789\|GO:0005622_0.783\|GO:0009987_0.747\|GO:0065007_0.709\|GO:0050789_0.692\|GO:0016020_0.689\|GO:0043226_0.653\|GO:0043229_0.637\|GO:0071840_0.617\|GO:0016043_0.609\|GO:0051179_0.590\|GO:0043227_0.585\|GO:0005737_0.578\|GO:0051234_0.569\|GO:0006810_0.567\|GO:0043231_0.562\|GO:0006996_0.538\|GO:0061024_0.511\|GO:0016192_0.510\|GO:0016050_0.504\|GO:0046903_0.501	IPR000008+518-632+\|IPR001849+658-764_659-766_660-762+\|IPR010439+963-1059_965-1404+\|IPR011993+658-771+\|IPR014770+1050-1181+\|IPR033227+190-1483+\|IPR035892+535-654_537-657+	SM00233+659-766+\|SM01145+963-1059+	PF00169+660-762+PH_domain\|PF06292+965-1404+MUN_domain	G3DSA:2.30.29.30:FF:000343+658-771+Calcium-dependent_secretion_activator	PTHR12166+190-1483+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-224;472-524	2.000	225-471;525-1523	7vs3_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.660	171090.120	6.694	4.500	28.102	10.177	51.543	48.457	14.839	13.263	49.770

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	blue	2129.377	921.766	1639.991	967.425	542.363	572.778	578.729	2227.198	413.909	6211.750	3726.961

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.602	—	-0.653	-0.866	—	—	1.856	-1.802	-4.011	—	-3.057	—	—

No JSON data available for plots.

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