SCN Proteipedia

Hg_chrom5_TN10mRNA_10575

Organism: Heterodera glycines Gene Locus: chr5:8465456-8487610 Feature type: polypeptide

Protein Sequence

Length: 2,642

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.21	0.81	1.197	0.209	0.902	1.795	0.861	1.287	0.833	0.982	0.396	1.069	0.915	1.223	1.367	1.2	1.247	1.072	0.408	0.379	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9953	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Not_Clustered	0.959

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RKMAQSDAAAVARRMPK	—	—	—	—	—	—	0.016	—	—	0.203	0.032	0.016	0.352	0.091	0.223	0.235	0.018	0.687	0.198

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004185	1.000	2.000	Hsc_gene_14223.t1;Hsc_gene_14223.t2	Hsc_gene_14182.t1;Hsc_gene_14182.t2;Hsc_gene_14183.t1;Hsc_gene_14223.t1;Hsc_gene_14223.t2	—	P33450.3 Cadherin-related tumor suppressor [Drosophila melanogaster]	KAI1704454.1 cadherin domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509\|GO:0005886\|GO:0007155\|GO:0007156\|GO:0016020\|GO:0098609	GO:0008150_0.873\|GO:0005575_0.794\|GO:0110165_0.789\|GO:0009987_0.696\|GO:0032501_0.679\|GO:0032502_0.639\|GO:0048856_0.625\|GO:0007275_0.594\|GO:0016020_0.591\|GO:0065007_0.580\|GO:0048731_0.560\|GO:0050789_0.559\|GO:0071944_0.551\|GO:0005886_0.519	IPR002126+408-420_560-698_1402-1485_1411-1487_1466-1485_1489-1639_1510-1636_1654-1732_1663-1738_1779-1896_1796-1988_1827-1853_1972-1989_2013-2113+\|IPR015919+686-799_1374-1487_1480-1629_1654-1732_1777-1851_1984-2081+\|IPR020894+1475-1485+\|IPR039808+1810-2059+	SM00112+1402-1485_1510-1636_1663-1738_1796-1988+	PF00028+1654-1732+Cadherin_domain	—	PTHR24027+1810-2059+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	647-693;793-1078;1177-1427;1524-1595;1849-1964;2328-2642	6.000	1-646;694-792;1079-1176;1428-1523;1596-1848;1965-2327	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.631	285310.130	5.516	-37.000	23.883	7.684	50.379	49.621	11.885	11.998	57.759

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	905.026	1457.259	468.188	291.633	391.866	1024.705	399.853	447.628	71.801	2225.215	1302.323

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.867	-2.458	-0.575	0.393	1.402	-1.349	-1.304	—	-5.047	—	—	—	—

No JSON data available for plots.

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