Hg_chrom5_TN10mRNA_10576
Organism: Heterodera glycines Gene Locus: chr5:8488094-8497345 Feature type: polypeptideProtein Sequence
Length: 891
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.148 | 0.809 | 1.265 | 0.155 | 1.104 | 1.468 | 0.748 | 1.347 | 0.898 | 1.153 | 0.442 | 0.66 | 1.403 | 1.295 | 1.626 | 0.754 | 0.957 | 1.139 | 0.259 | 0.759 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9954
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
— | — | — | — | — | — |
1-23
|
0.977
|
1.000
|
0.000
|
0.000
|
0.307
|
0.401
|
0.031
|
0.352
|
0.133
|
0.064
|
0.145
|
0.022
|
0.631
|
0.501
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_14223.t1
|
— |
Q2PZL6.2 Protocadherin Fat 4 [Mus musculus]
|
KAI1713319.1 cadherin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005886|GO:0007155|GO:0007156|GO:0016020
|
GO:0005575_0.870|GO:0110165_0.870|GO:0008150_0.868|GO:0009987_0.763|GO:0016020_0.748|GO:0032501_0.637|GO:0032502_0.613|GO:0048856_0.613|GO:0071944_0.587|GO:0005622_0.578|GO:0005886_0.569|GO:0007275_0.554|GO:0065007_0.536|GO:0048731_0.523|GO:0050789_0.519
|
IPR002126+158-312_364-383_436-465_444-537_476-539_518-537_537-550_540-665_561-662_646-663+|IPR015919+532-656+|IPR020894+527-537+
|
SM00112+444-537_561-662+
|
— | — |
PTHR24026+416-841+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
623-789
|
2.000
|
1-622;790-891
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.503
|
99158.270
|
5.627
|
-12.000
|
27.160
|
10.662
|
47.475
|
52.525
|
13.580
|
13.580
|
52.413
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
104.759
|
94.122
|
18.651
|
10.734
|
30.728
|
113.634
|
21.408
|
21.671
|
4.112
|
338.632
|
195.266
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.565
|
-3.272
|
-0.689
|
1.489
|
1.901
|
-2.399
|
-2.501
|
— |
-6.452
|
— | — | — | — |