SCN Proteipedia

Hg_chrom5_TN10mRNA_10578

Organism: Heterodera glycines Gene Locus: chr5:8514755-8519946 Feature type: polypeptide

Protein Sequence

Length: 473

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.959	0.885	0.846	0.365	0.81	1.301	0.831	1.057	1.081	1.114	0.961	0.871	1.057	1.301	1.036	1.208	1.178	1.025	0.325	1.119	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9956	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.986

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.672	0.225	0.032	0.570	0.077	0.082	0.139	0.066	0.211	0.080

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004186	1.000	2.000	Hsc_gene_14216.t1;Hsc_gene_14216.t2	Hsc_gene_14216.t1;Hsc_gene_14216.t2;Hsc_gene_14216.t3	—	Q91757.1 Glycogen synthase kinase-3 beta [Xenopus laevis]	KAI1725762.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.977\|GO:0009987_0.866\|GO:0065007_0.802\|GO:0050789_0.793\|GO:0050896_0.778\|GO:0003674_0.762\|GO:0005575_0.757\|GO:0050794_0.739\|GO:0003824_0.713\|GO:0140096_0.713\|GO:0110165_0.709\|GO:0016740_0.697\|GO:0051716_0.688\|GO:0016772_0.675\|GO:0008152_0.674\|GO:0043170_0.674\|GO:0007154_0.669\|GO:0004672_0.666\|GO:0016301_0.666\|GO:0016773_0.666\|GO:0023052_0.665\|GO:0007165_0.660\|GO:0005622_0.648\|GO:0044238_0.642\|GO:0044237_0.612\|GO:0019538_0.605\|GO:0004674_0.575\|GO:0032502_0.552\|GO:0048856_0.549\|GO:0016020_0.545\|GO:0043226_0.533\|GO:0048518_0.528\|GO:0043229_0.520\|GO:0048583_0.513	IPR000719+28-312+\|IPR008271+149-161+\|IPR011009+27-324+\|IPR017441+34-58+\|IPR039192+23-315+\|IPR050591+11-355+	SM00220+28-312+	PF00069+28-312+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000055+109-356+Glycogen_synthase_kinase-3_beta\|G3DSA:3.30.200.20:FF:000009+12-108+Glycogen_synthase_kinase-3_beta	PTHR24057+11-355+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-22;309-473	1.000	23-308	5t31_B	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.886	51877.920	9.337	14.000	23.044	10.148	47.569	52.431	13.531	9.514	53.911

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2992.358	2549.492	2919.663	2071.715	2438.403	2560.917	2923.316	3176.168	2244.845	4418.056	3486.680

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.436	-0.386	0.203	—	0.201	—	—	—	—	—	—	—

No JSON data available for plots.

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