Hg_chrom5_TN10mRNA_10581
Organism: Heterodera glycines Gene Locus: chr5:8527577-8532107 Feature type: polypeptideProtein Sequence
Length: 574
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.77 | 1.134 | 1.014 | 0.901 | 1.626 | 1.206 | 0.726 | 1.307 | 1.007 | 1.059 | 1.056 | 1.025 | 0.726 | 1.039 | 1.458 | 0.597 | 1.2 | 0.739 | 1.072 | 0.922 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9959
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKRKSAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.693
|
0.240
|
0.023
|
0.429
|
0.108
|
0.018
|
0.067
|
0.007
|
0.043
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009962
|
1.000
|
1.000
|
Hsc_gene_14212.t1
|
Hsc_gene_14212.t1;Hsc_gene_14213.t1
|
— |
Q8IZ73.2 Pseudouridylate synthase RPUSD2 [Homo sapiens]
|
KAI1727889.1 RNA pseudouridylate synthase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001522|GO:0003723|GO:0009451|GO:0009982
|
GO:0003674_0.778|GO:0008150_0.774|GO:0005575_0.736|GO:0110165_0.732|GO:0005622_0.666|GO:0008152_0.640|GO:0044238_0.627|GO:0003824_0.619|GO:0009987_0.614|GO:0043170_0.614|GO:0006139_0.582|GO:0005737_0.565|GO:0090304_0.562|GO:0016070_0.556|GO:0009982_0.535|GO:0016853_0.535|GO:0016866_0.535|GO:0043412_0.530|GO:0044237_0.501
|
IPR006145+210-361+|IPR006224+252-266+|IPR006225+134-422+|IPR020103+194-498+|IPR050188+127-500+
|
— |
PF00849+210-361+RNA_pseudouridylate_synthase
|
— |
PTHR21600+127-500+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-104;486-574
|
1.000
|
105-485
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.551
|
65521.800
|
6.556
|
0.500
|
32.056
|
9.756
|
53.136
|
46.864
|
16.725
|
15.331
|
47.561
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1394.819
|
1917.291
|
1431.144
|
1843.338
|
1782.755
|
1414.123
|
1528.850
|
1038.134
|
1326.572
|
999.039
|
1139.410
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.652
|
-0.194
|
0.474
|
— |
-0.320
|
— |
-0.550
|
0.702
|
— | — | — | — | — |
No JSON data available for plots.