Hg_chrom5_TN10mRNA_10582
Organism: Heterodera glycines Gene Locus: chr5:8532124-8539049 Feature type: polypeptideProtein Sequence
Length: 580
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.022 | 0.922 | 0.846 | 0.416 | 0.862 | 1.813 | 0.78 | 1.81 | 0.92 | 1.864 | 0.392 | 1.014 | 1.485 | 1.326 | 1.654 | 0.468 | 0.565 | 0.836 | 1.459 | 0.659 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9960
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
10-50
|
0.998
|
48-83
|
0.969
|
— | — |
0.000
|
— | — |
0.056
|
0.236
|
0.014
|
0.094
|
0.882
|
0.107
|
0.153
|
0.061
|
0.226
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009963
|
1.000
|
1.000
|
Hsc_gene_14211.t1
|
Hsc_gene_14211.t1
|
— |
H2KYS3.1 3-ketosteroid oxygenase [Caenorhabditis elegans]
|
KAI1711334.1 cytochrome p450 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.909|GO:0003674_0.744|GO:0009987_0.698|GO:0008152_0.608|GO:0003824_0.592|GO:0005575_0.551|GO:0110165_0.548|GO:0044237_0.532
|
IPR001128+52-567_381-398_433-444_510-519_519-530+|IPR002401+80-99_370-387_390-416_432-450_474-498_509-519_519-542+|IPR017972+512-521+|IPR036396+42-575_51-573+|IPR050182+31-551+
|
— |
PF00067+52-567+Cytochrome_P450
|
— |
PTHR24300+31-551+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
291-337
|
2.000
|
1-290;338-580
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.700
|
66081.080
|
8.572
|
15.500
|
24.138
|
13.103
|
41.897
|
58.103
|
14.310
|
9.828
|
44.310
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
577.245
|
101.380
|
110.173
|
73.245
|
31.952
|
64.493
|
356.589
|
69.705
|
2.233
|
2220.945
|
1270.068
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.607
|
-0.481
|
-1.233
|
1.031
|
2.477
|
— |
2.496
|
-10.042
|
5.212
|
-5.596
|
— | — |
No JSON data available for plots.