SCN Proteipedia

Hg_chrom5_TN10mRNA_10584

Organism: Heterodera glycines Gene Locus: chr5:8541832-8545636 Feature type: polypeptide

Protein Sequence

Length: 388

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.049	1.019	0.984	0.533	0.687	1.123	0.982	1.418	1.317	1.184	0.703	1.061	0.501	0.843	1.315	1.252	0.972	1.367	0.397	0.606	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9962	—	—	1.111	1.000	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	62-82	0.999	—	—	0.000	—	—	0.726	0.133	0.030	0.362	0.084	0.097	0.146	0.028	0.063	0.068

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009964	1.000	1.000	Hsc_gene_14210.t1	—	—	Q8VBV3.1 Exosome complex component RRP4 [Mus musculus]	KAI1711300.1 KH domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000178\|GO:0003676\|GO:0003723	GO:0005575_0.893\|GO:0110165_0.882\|GO:0005622_0.818\|GO:0008150_0.795\|GO:0016020_0.784\|GO:0043226_0.748\|GO:0043229_0.738\|GO:0005737_0.736\|GO:0009987_0.733\|GO:0043227_0.711\|GO:0043231_0.688\|GO:0065007_0.685\|GO:0050789_0.674\|GO:0050794_0.662\|GO:0008152_0.646\|GO:0044238_0.631\|GO:0044237_0.630\|GO:0005634_0.620\|GO:0009058_0.618\|GO:0043170_0.617\|GO:0044249_0.604\|GO:0009059_0.597\|GO:0010467_0.591\|GO:0006139_0.590\|GO:0090304_0.571\|GO:0016070_0.569\|GO:0043228_0.506\|GO:0043232_0.506	IPR003029+160-240_162-240+\|IPR004088+250-289+\|IPR012340+155-247_157-248+\|IPR025721+107-143+\|IPR026699+110-345+\|IPR036612+249-366+\|IPR048565+156-228_156-247+	SM00316+160-240+	PF14382+107-143+Exosome_complex_exonuclease_RRP4_N-terminal_region\|PF15985+250-289+KH_domain\|PF21266+156-228+RRP4,_S1_domain	G3DSA:2.40.50.140:FF:000038+157-248+Exosome_complex_component_RRP4	PTHR21321+110-345+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-55;368-388	1.000	56-367	9g8p_I	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.868	41754.540	8.919	11.500	23.454	7.216	46.907	53.093	13.918	9.536	56.701

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	magenta	337.531	695.480	288.303	419.149	475.004	328.966	656.897	199.744	163.891	204.950	187.354

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.499	-0.868	0.648	0.149	-0.516	1.007	-0.823	1.859	—	—	—	—	—

No JSON data available for plots.

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