Hg_chrom5_TN10mRNA_10585
Organism: Heterodera glycines Gene Locus: chr5:8546089-8553577 Feature type: polypeptideProtein Sequence
Length: 763
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.265 | 1.097 | 0.429 | 0.362 | 0.721 | 0.807 | 1.061 | 0.721 | 1.514 | 1.505 | 0.516 | 2.082 | 2.184 | 0.706 | 0.722 | 1.254 | 0.924 | 1.052 | 0.403 | 0.385 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9963
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
nucleus
|
KQRRRARRATRHK,RKFTPQEKLENNKKLRH
|
— | — | — | — |
1-29
|
0.948
|
1.000
|
11.000
|
11.000
|
0.070
|
0.058
|
0.006
|
0.159
|
0.387
|
0.638
|
0.386
|
0.015
|
0.591
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009965
|
1.000
|
1.000
|
Hsc_gene_14209.t1
|
Hsc_gene_14209.t1
|
— |
Q9Y2E8.4 Sodium/hydrogen exchanger 8 [Homo sapiens]
|
KAI1702831.1 sodium/hydrogen exchanger family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006812|GO:0006814|GO:0006885|GO:0015297|GO:0015385|GO:0016020|GO:0055085|GO:1902600
|
GO:0005575_0.904|GO:0008150_0.904|GO:0110165_0.904|GO:0016020_0.833|GO:0071944_0.794|GO:0005886_0.790|GO:0009987_0.789|GO:0006810_0.762|GO:0051179_0.762|GO:0051234_0.762|GO:0055085_0.680|GO:0003674_0.652|GO:0006811_0.646|GO:0005622_0.626|GO:0043226_0.606|GO:0065007_0.594|GO:0005215_0.591|GO:0022857_0.591|GO:0034220_0.587|GO:0043229_0.576|GO:0098660_0.574|GO:0005737_0.559|GO:0006812_0.549|GO:0098655_0.546|GO:0098662_0.542|GO:0043227_0.540|GO:0015075_0.507|GO:0043231_0.505
|
IPR004709+97-511_160-171_174-188_189-197_229-239+|IPR006153+111-505+|IPR018422+87-681+
|
— |
PF00999+111-505+Sodium/hydrogen_exchanger_family
|
— |
PTHR10110+87-681+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
522-580;672-763
|
2.000
|
1-521;581-671
|
2mdf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.820
|
81602.920
|
7.902
|
7.500
|
15.072
|
11.140
|
37.353
|
62.647
|
8.388
|
6.684
|
52.949
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
1220.732
|
1292.417
|
1261.599
|
985.941
|
1082.274
|
2063.202
|
2106.202
|
1314.787
|
1116.412
|
713.484
|
886.168
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.263
|
-0.528
|
-0.248
|
— |
0.945
|
— |
-0.757
|
0.822
|
— | — | — | — | — |