Hg_chrom5_TN10mRNA_10587
Organism: Heterodera glycines Gene Locus: chr5:8564261-8567376 Feature type: polypeptideProtein Sequence
Length: 246
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.087 | 0.662 | 0.665 | 0.981 | 0.407 | 1.251 | 0.968 | 2.439 | 1.084 | 0.989 | 0.616 | 1.196 | 1.468 | 0.938 | 1.576 | 0.929 | 0.866 | 1.17 | 2.189 | 0.717 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9965
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
24-44
|
0.996
|
11-56
|
0.889
|
— | — |
0.000
|
— | — |
0.092
|
0.840
|
0.058
|
0.221
|
0.204
|
0.067
|
0.172
|
0.186
|
0.049
|
0.153
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000876
|
4.000
|
2.000
|
Hsc_gene_23292.t1;Hsc_gene_23292.t2
|
— | — |
Q27257.1 Protein dif-1 [Caenorhabditis elegans]
|
KHN82789.1 Protein dif-1 [Toxocara canis]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.842|GO:0005575_0.828|GO:0110165_0.828|GO:0016020_0.753|GO:0005622_0.694|GO:0005737_0.682|GO:0043226_0.676|GO:0009987_0.658|GO:0043229_0.651|GO:0043227_0.650|GO:0043231_0.650|GO:0003674_0.629|GO:0051179_0.584|GO:0006810_0.580|GO:0051234_0.580|GO:0005739_0.510
|
IPR018108+113-199_114-206_197-242+|IPR023395+62-245_86-234+|IPR050567+99-196+
|
— |
PF00153+113-199_197-242+Mitochondrial_carrier_protein
|
— |
PTHR45624+99-196+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-246
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
27560.750
|
10.289
|
20.000
|
22.764
|
15.447
|
42.276
|
57.724
|
16.667
|
6.098
|
51.220
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
261.781
|
10.757
|
27.211
|
34.690
|
49.969
|
31.064
|
59.777
|
97.530
|
1.719
|
1027.380
|
587.811
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.107
|
1.550
|
— |
0.492
|
-0.672
|
0.956
|
1.549
|
-0.563
|
-9.336
|
4.513
|
— | — | — |
No JSON data available for plots.