Hg_chrom5_TN10mRNA_10588
Organism: Heterodera glycines Gene Locus: chr5:8584382-8587201 Feature type: polypeptideProtein Sequence
Length: 307
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.098 | 0.076 | 0.888 | 0.786 | 0.543 | 1.42 | 1.047 | 2.932 | 1.158 | 0.88 | 0.642 | 1.724 | 1.629 | 1.19 | 0.931 | 1.256 | 1.228 | 0.938 | 0.251 | 0.383 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9966
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
85-120
|
0.998
|
— | — |
0.000
|
— | — |
0.602
|
0.282
|
0.004
|
0.533
|
0.072
|
0.084
|
0.054
|
0.018
|
0.042
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009966
|
1.000
|
1.000
|
Hsc_gene_14208.t1
|
— | — |
Q28521.3 Heterogeneous nuclear ribonucleoprotein A1 [Macaca mulatta]
|
KAI1732422.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.831|GO:0110165_0.831|GO:0008150_0.809|GO:0003674_0.756|GO:0009987_0.698|GO:0005622_0.693|GO:0005488_0.670|GO:0016020_0.624|GO:0043226_0.607|GO:0043229_0.601|GO:0097159_0.581|GO:0003676_0.559|GO:0043227_0.531|GO:0043231_0.521|GO:0003723_0.518|GO:0008152_0.511
|
IPR000504+118-194_119-191_120-178_218-289_219-285_233-282+|IPR012677+114-196_197-299+|IPR035979+116-286+
|
SM00360+119-191_219-285+
|
PF00076+120-178_233-282+RNA_recognition_motif
|
G3DSA:3.30.70.330:FF:000040+113-197+Heterogeneous_nuclear_ribonucleoprotein_A2/B1
|
PTHR48033+116-288+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
273-307
|
1.000
|
1-272
|
4yoe_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
33120.740
|
8.013
|
11.000
|
22.801
|
13.355
|
44.951
|
55.049
|
14.658
|
8.143
|
54.397
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
greenyellow
|
972.808
|
657.872
|
1041.327
|
950.784
|
1327.603
|
1603.855
|
1537.230
|
1191.848
|
372.322
|
860.350
|
651.195
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.434
|
0.394
|
— |
0.449
|
0.288
|
— |
-0.531
|
0.509
|
— | — | — | — | — |
No JSON data available for plots.