Hg_chrom5_TN10mRNA_10590
Organism: Heterodera glycines Gene Locus: chr5:8590812-8595250 Feature type: polypeptideProtein Sequence
Length: 458
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.838 | 1.117 | 0.754 | 0.678 | 0.801 | 1.12 | 0.468 | 1.528 | 1.067 | 1.475 | 0.562 | 1.541 | 1.941 | 0.504 | 1.381 | 0.842 | 1.002 | 1.125 | 1.847 | 1.605 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9968
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKHLQRYETLEKRRADK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.035
|
0.150
|
0.008
|
0.095
|
0.362
|
0.339
|
0.225
|
0.019
|
0.550
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009968
|
1.000
|
1.000
|
Hsc_gene_14206.t1
|
Hsc_gene_14206.t1
|
— |
Q21123.1 Innexin-7 [Caenorhabditis elegans]
|
KAF7629165.1 Innexin, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.877|GO:0110165_0.877|GO:0008150_0.791|GO:0009987_0.660|GO:0030054_0.610|GO:0005911_0.524|GO:0070161_0.524|GO:0003674_0.515|GO:0016020_0.512|GO:0005921_0.503
|
IPR000990+3-425_14-397_20-389_42-53_70-79_103-125_202-216_251-260_275-291+
|
— |
PF00876+20-389+Innexin
|
— |
PTHR11893+3-425+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-458
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.625
|
53636.820
|
8.639
|
14.000
|
22.489
|
17.904
|
43.668
|
56.332
|
13.537
|
8.952
|
44.105
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
429.392
|
418.396
|
427.907
|
426.813
|
429.779
|
486.257
|
622.762
|
639.230
|
169.074
|
457.608
|
333.951
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.197
|
— | — | — |
0.193
|
0.367
|
— | — | — | — | — | — | — |
No JSON data available for plots.