Hg_chrom5_TN10mRNA_10591
Organism: Heterodera glycines Gene Locus: chr5:8595562-8597514 Feature type: polypeptideProtein Sequence
Length: 128
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.818 | 0.363 | 0.852 | 0.808 | 1.042 | 1.002 | 1.116 | 1.172 | 1.215 | 1.478 | 0.71 | 1.379 | 1.519 | 0.601 | 0.638 | 1.004 | 1.025 | 0.947 | 3.606 | 0.919 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9969
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.221
|
0.133
|
0.007
|
0.113
|
0.663
|
0.522
|
0.538
|
0.029
|
0.287
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009969
|
1.000
|
1.000
|
Hsc_gene_14205.t2
|
Hsc_gene_14205.t1;Hsc_gene_14205.t2
|
— |
Q9CQT9.1 GEL complex subunit OPTI [Mus musculus]
|
KAI1726992.1 rab5-interacting protein (Rab5ip) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0097250
|
GO:0008150_0.927|GO:0005575_0.909|GO:0110165_0.909|GO:0009987_0.858|GO:0016020_0.835|GO:0005622_0.797|GO:0005737_0.797|GO:0043226_0.725|GO:0043227_0.706|GO:0043229_0.706|GO:0043231_0.706|GO:0071840_0.705|GO:0016043_0.702|GO:0006996_0.683|GO:0051179_0.554|GO:0051234_0.553
|
IPR010742+11-126+|IPR029008+42-121+
|
— |
PF07019+42-121+EMC6
|
— |
PTHR12906+11-126+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14
|
1.000
|
15-128
|
7tut_9
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
14393.520
|
5.098
|
-2.500
|
21.094
|
15.625
|
39.844
|
60.156
|
10.156
|
10.938
|
47.656
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
717.876
|
369.991
|
513.452
|
1049.483
|
1217.541
|
1079.845
|
695.309
|
495.371
|
187.574
|
967.156
|
633.050
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.243
|
1.368
|
1.140
|
0.182
|
— |
-0.627
|
-1.224
|
0.627
|
-2.498
|
— | — | — | — |
No JSON data available for plots.