Hg_chrom5_TN10mRNA_10596
Organism: Heterodera glycines Gene Locus: chr5:8631715-8633759 Feature type: polypeptideProtein Sequence
Length: 510
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.73 | 1.094 | 0.82 | 0.744 | 0.915 | 1.357 | 0.584 | 0.882 | 1.307 | 1.086 | 1.218 | 0.923 | 0.871 | 1.018 | 1.281 | 1.373 | 0.9 | 1.04 | 1.357 | 0.865 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9974
|
— | — |
0.889
|
1.000
|
2.000
|
1.000
|
— |
1.000
|
— |
1.000
|
— |
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.794
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRS,PKPS,KKKKPSRR,RKYQKLIQRVSRRSKRE,KKKVKLHRETKEQRKYQK
|
28-50
|
0.979
|
— | — | — | — |
0.000
|
— | — |
0.829
|
0.058
|
0.017
|
0.337
|
0.071
|
0.039
|
0.050
|
0.019
|
0.094
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009972
|
1.000
|
1.000
|
Hsc_gene_24075.t1
|
— | — | — | — |
KAJ7706402
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
— |
IPR003653+204-399_219-398+|IPR038765+208-433+
|
— |
PF02902+219-398+Ulp1_protease_family,_C-terminal_catalytic_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-111
|
1.000
|
112-510
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.847
|
57552.870
|
9.898
|
26.500
|
26.078
|
9.608
|
51.176
|
48.824
|
16.078
|
10.000
|
49.804
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
621.515
|
15.841
|
6.167
|
6.673
|
13.296
|
10.917
|
5.170
|
22.918
|
2.924
|
2686.565
|
1536.433
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.591
|
-1.384
|
— |
0.964
|
— |
-1.068
|
0.969
|
-2.007
|
-7.104
|
— |
-4.677
|
— | — |
No JSON data available for plots.