SCN Proteipedia

Hg_chrom5_TN10mRNA_10602

Organism: Heterodera glycines Gene Locus: chr5:8673759-8674959 Feature type: polypeptide

Protein Sequence

Length: 136

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.453	0.171	0.535	0.254	0.858	1.508	0.613	0.735	1.144	1.292	1.448	0.865	0.817	0.848	2.701	0.63	1.326	0.668	0.0	0.649	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9980	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-Not_Clustered	0.882

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	nucleus	—	KKPHRYRPGTVALREIRR,KRVTIMPKDIQLARRIRG,ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRP	52-74	0.968	—	—	—	—	0.000	—	—	0.684	0.132	0.169	0.300	0.074	0.078	0.064	0.091	0.102	0.310

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009977	1.000	1.000	Hsc_gene_14192.t1	Hsc_gene_14192.t1	B0035.10;F07B7.5;F08G2.3;F17E9.10;F22B3.2;F45E1.6;F45F2.13;F54E12.1;F55G1.2;K03A1.1;K06C4.13;K06C4.5;T10C6.13;W05B10.1;W09H1.2;Y49E10.6a;ZK131.2;ZK131.3;ZK131.7	P02299.4 Histone H3 [Drosophila melanogaster]	BAD90754.1 histone 3 [Conocephalum conicum];BAD90757.1 histone 3 [Conocephalum conicum]	No	-0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000786\|GO:0003677\|GO:0030527\|GO:0046982	GO:0005575_0.900\|GO:0110165_0.893\|GO:0005622_0.848\|GO:0043226_0.819\|GO:0043229_0.813\|GO:0016020_0.751\|GO:0043227_0.687\|GO:0043231_0.669\|GO:0043228_0.596\|GO:0043232_0.596\|GO:0008150_0.575\|GO:0005634_0.546\|GO:0009987_0.545	IPR000164+1-135_3-17_15-21_17-31_34-55_34-136_58-75_67-75_80-98_98-114_114-135+\|IPR007125+7-132+\|IPR009072+2-133_2-136+	SM00428+34-136+	PF00125+7-132+Core_histone_H2A/H2B/H3/H4	G3DSA:1.10.20.10:FF:000044+53-136+Histone_H3.3\|G3DSA:1.10.20.10:FF:000078+2-50+Histone_H3	PTHR11426+1-135+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-47;136-136	1.000	48-135	9oh2_E	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.964	15400.020	11.829	21.000	32.353	6.618	51.471	48.529	24.265	8.088	43.382

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	blue	1595.300	318.867	255.431	566.148	1235.744	1556.002	929.409	407.685	299.175	4779.073	2859.117

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.550	0.691	1.257	1.093	0.348	-0.734	-2.049	1.336	-4.139	—	—	—	—

No JSON data available for plots.

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