Hg_chrom5_TN10mRNA_10604
Organism: Heterodera glycines Gene Locus: chr5:8676080-8683120 Feature type: polypeptideProtein Sequence
Length: 867
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.899 | 1.368 | 0.818 | 1.591 | 1.0 | 1.36 | 0.838 | 1.038 | 0.974 | 0.795 | 0.524 | 0.95 | 1.314 | 1.109 | 1.177 | 1.203 | 1.059 | 1.083 | 0.266 | 0.848 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9982
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
RRKRR
|
— | — | — | — | — |
0.767
|
0.210
|
1.000
|
— |
0.081
|
0.021
|
0.014
|
0.263
|
0.239
|
0.487
|
0.593
|
0.077
|
0.793
|
0.177
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009978
|
1.000
|
1.000
|
Hsc_gene_14190.t1
|
Hsc_gene_14190.t1
|
— |
Q27394.2 Protein let-653 [Caenorhabditis elegans]
|
KAI1732632.1 PAN domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.962|GO:0005575_0.916|GO:0110165_0.913|GO:0009987_0.908|GO:0065007_0.882|GO:0003674_0.873|GO:0050789_0.861|GO:0032501_0.836|GO:0032502_0.819|GO:0048856_0.819|GO:0016020_0.812|GO:0071944_0.801|GO:0007275_0.787|GO:0005886_0.775|GO:0048731_0.772|GO:0048518_0.760|GO:0048519_0.754|GO:0030154_0.752|GO:0048869_0.752|GO:0048468_0.739|GO:0048513_0.731|GO:0051239_0.721|GO:0009653_0.717|GO:0065008_0.716|GO:0009888_0.706|GO:0050793_0.706|GO:0040007_0.705|GO:0048589_0.698|GO:2000026_0.694|GO:0009790_0.691|GO:0048646_0.691|GO:0060429_0.690|GO:0035295_0.689|GO:0051094_0.688|GO:0051240_0.688|GO:0051241_0.687|GO:0051093_0.685|GO:0009791_0.684|GO:0030855_0.684|GO:0002009_0.683|GO:0009887_0.683|GO:0022603_0.683|GO:0035239_0.683|GO:0048729_0.683|GO:0060562_0.681|GO:0003002_0.679|GO:0007389_0.679|GO:0040008_0.679|GO:0002064_0.678|GO:0048568_0.678|GO:0048598_0.678|GO:0048638_0.677|GO:0090066_0.677|GO:0048562_0.675|GO:0002164_0.674|GO:0002119_0.670|GO:0007439_0.670|GO:0035017_0.670|GO:0035148_0.670|GO:0035150_0.670|GO:0035264_0.670|GO:0040014_0.670|GO:0040018_0.670|GO:0040025_0.670|GO:0040026_0.670|GO:0040028_0.670|GO:0042335_0.670|GO:0045927_0.670|GO:0048546_0.670|GO:0048557_0.670|GO:0048565_0.670|GO:0048566_0.670|GO:0048567_0.670|GO:0048580_0.670|GO:0048582_0.670|GO:0048611_0.670|GO:0048613_0.670|GO:0048639_0.670|GO:0055123_0.670|GO:0060605_0.670|GO:0061062_0.670|GO:0061063_0.670|GO:0072175_0.670|GO:1903132_0.670|GO:1903133_0.670|GO:1905276_0.670|GO:1905278_0.670|GO:1905330_0.670|GO:1905332_0.670|GO:0005198_0.650|GO:0042302_0.650|GO:0005576_0.612|GO:0098590_0.599|GO:0005615_0.583|GO:0009986_0.571|GO:0099080_0.563|GO:0099081_0.555|GO:0099512_0.555|GO:0045177_0.548|GO:0097478_0.547|GO:0098552_0.547|GO:0016324_0.546|GO:0009897_0.540|GO:0009898_0.540|GO:0098562_0.540|GO:0098591_0.540|GO:0098592_0.540
|
IPR001507+429-708_429-712+|IPR003609+58-149_61-148_65-149_159-242_161-241_165-242_249-333_253-332_258-333_343-420_344-419_348-420+|IPR052774+319-421+
|
SM00241+429-708+|SM00473+61-148_161-241_253-332_344-419+
|
PF00024+65-149_165-242_258-333_348-420+PAN_domain
|
— |
PTHR47327+319-421+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22;534-578;707-753;866-867
|
3.000
|
23-533;579-706;754-865
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.770
|
95025.730
|
6.317
|
-2.000
|
21.799
|
10.035
|
47.866
|
52.134
|
11.303
|
10.496
|
57.555
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
1788.993
|
817.255
|
101.717
|
399.084
|
2383.812
|
3239.966
|
977.636
|
481.397
|
564.085
|
4253.454
|
2672.296
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.237
|
-1.171
|
2.082
|
2.546
|
0.460
|
-1.720
|
-2.869
|
1.169
|
— | — | — | — | — |