Hg_chrom5_TN10mRNA_10607
Organism: Heterodera glycines Gene Locus: chr5:8700626-8709888 Feature type: polypeptideProtein Sequence
Length: 1,305
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.31 | 0.873 | 0.961 | 0.951 | 0.817 | 1.513 | 0.502 | 2.452 | 0.988 | 1.802 | 0.639 | 1.262 | 1.149 | 0.589 | 1.016 | 1.095 | 0.729 | 0.79 | 0.472 | 0.811 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9985
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.316
|
0.211
|
0.014
|
0.598
|
0.392
|
0.389
|
0.227
|
0.048
|
0.212
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009980
|
1.000
|
1.000
|
Hsc_gene_14186.t1
|
Hsc_gene_14186.t1
|
— |
P55163.2 Membrane-associated protein gex-3 [Caenorhabditis elegans]
|
KAI1732630.1 membrane-associated apoptosis protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.897|GO:0005575_0.796|GO:0110165_0.788|GO:0009987_0.777|GO:0032501_0.710|GO:0032502_0.706|GO:0048856_0.706|GO:0065007_0.666|GO:0005622_0.652|GO:0050789_0.636|GO:0071840_0.624|GO:0016043_0.623|GO:0050794_0.620|GO:0007275_0.603|GO:0048731_0.535|GO:0007399_0.513|GO:0005737_0.501
|
IPR019137+11-1284_14-1280+
|
— |
PF09735+11-1284+Nck-associated_protein_1
|
— |
PTHR12093+14-1280+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1299-1305
|
1.000
|
1-1298
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.495
|
145393.450
|
7.038
|
19.000
|
24.291
|
12.414
|
46.054
|
53.946
|
14.100
|
10.192
|
47.663
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1571.962
|
1903.075
|
1029.616
|
1036.901
|
1118.120
|
1619.009
|
2744.050
|
968.242
|
2383.948
|
1182.244
|
1697.260
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.115
|
-1.013
|
— | — |
0.548
|
0.771
|
-0.848
|
1.645
|
— | — | — |
3.110
|
— |
No JSON data available for plots.