Hg_chrom5_TN10mRNA_10611
Organism: Heterodera glycines Gene Locus: chr5:8728712-8730762 Feature type: polypeptideProtein Sequence
Length: 220
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.793 | 1.057 | 1.074 | 0.47 | 1.288 | 0.932 | 1.19 | 1.591 | 1.212 | 0.676 | 1.171 | 1.872 | 1.894 | 0.612 | 1.206 | 0.844 | 0.82 | 1.24 | 0.0 | 0.134 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9989
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
39-78
|
0.983
|
— | — |
0.000
|
— | — |
0.831
|
0.129
|
0.013
|
0.263
|
0.108
|
0.016
|
0.019
|
0.229
|
0.052
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000854
|
4.000
|
2.000
|
Hsc_gene_24358.t1;Hsc_gene_24362.t1
|
Hsc_gene_14184.t1
|
— |
Q27450.1 Peptidyl-prolyl cis-trans isomerase 1 [Brugia malayi]
|
KAF7635022.1 PPIase cyclophilin-type domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000413|GO:0003755|GO:0006457
|
GO:0005575_0.727|GO:0110165_0.695|GO:0005622_0.650|GO:0008150_0.621|GO:0003674_0.616|GO:0005737_0.558|GO:0016020_0.520
|
IPR002130+16-179_16-181_33-48_70-82_113-128_128-140_141-156+|IPR020892+65-82+|IPR029000+1-190_11-182+
|
— |
PF00160+16-179+Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD
|
G3DSA:2.40.100.10:FF:000005+7-190+Peptidyl-prolyl_cis-trans_isomerase_G
|
PTHR11071+12-182+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
178-220
|
1.000
|
1-177
|
1c5f_O
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
24275.560
|
7.446
|
3.500
|
30.455
|
10.455
|
49.545
|
50.455
|
16.818
|
13.636
|
50.909
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
112.358
|
50.657
|
79.432
|
100.787
|
96.949
|
82.513
|
117.755
|
121.104
|
55.542
|
206.462
|
141.782
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.417
|
0.856
|
0.453
|
— | — |
0.525
|
0.451
|
— | — | — | — | — | — |
No JSON data available for plots.