Hg_chrom5_TN10mRNA_10612
Organism: Heterodera glycines Gene Locus: chr5:8734851-8737265 Feature type: polypeptideProtein Sequence
Length: 356
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.653 | 1.176 | 0.613 | 0.387 | 1.311 | 1.008 | 0.869 | 1.404 | 1.685 | 1.025 | 0.638 | 2.479 | 1.717 | 0.648 | 1.548 | 1.043 | 0.783 | 0.851 | 1.296 | 0.826 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9990
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— | — |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.310
|
0.169
|
0.070
|
0.593
|
0.132
|
0.248
|
0.106
|
0.018
|
0.457
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004191
|
2.000
|
1.000
|
Hsc_gene_12299.t1
|
— | — |
Q22146.1 Fer-related kinase 1 [Caenorhabditis elegans]
|
KAF7635113.1 Tyrosine-protein kinase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.946|GO:0009987_0.869|GO:0005575_0.831|GO:0110165_0.818|GO:0003674_0.719|GO:0065007_0.709|GO:0050789_0.696|GO:0003824_0.643|GO:0050794_0.642|GO:0005622_0.616|GO:0008152_0.594|GO:0050896_0.588|GO:0016740_0.581|GO:0044237_0.569|GO:0016020_0.564|GO:0032501_0.537|GO:0051716_0.525|GO:0140096_0.523|GO:0044238_0.503
|
IPR000719+119-351+|IPR000980+11-98_13-111_15-92+|IPR001245+139-191_195-349_213-231_258-268_277-299+|IPR008266+219-231+|IPR011009+125-351+|IPR035849+11-99+|IPR036860+1-112_6-113+|IPR050198+14-351+
|
SM00252+11-98+
|
PF00017+15-92+SH2_domain|PF07714+139-191_195-349+Protein_tyrosine_and_serine/threonine_kinase
|
— |
PTHR24418+14-351+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-356
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.754
|
40886.870
|
8.158
|
7.000
|
25.843
|
13.483
|
46.910
|
53.090
|
14.607
|
11.236
|
43.539
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
90.615
|
25.488
|
33.891
|
55.464
|
62.444
|
80.859
|
87.228
|
70.110
|
0.255
|
240.442
|
137.505
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.983
|
0.820
|
— |
0.388
|
— | — |
0.460
|
-8.259
|
6.172
|
— | — | — |
No JSON data available for plots.