Hg_chrom5_TN10mRNA_10616
Organism: Heterodera glycines Gene Locus: chr5:8752245-8753947 Feature type: polypeptideProtein Sequence
Length: 166
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.49 | 1.821 | 1.643 | 0.415 | 2.108 | 1.081 | 1.147 | 0.301 | 1.205 | 0.977 | 1.46 | 1.063 | 0.669 | 0.348 | 1.475 | 0.775 | 0.395 | 0.73 | 0.463 | 0.532 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9994
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.612
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KNKGKGGKNRRRGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.569
|
0.222
|
0.018
|
0.622
|
0.083
|
0.091
|
0.049
|
0.001
|
0.075
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009981
|
1.000
|
1.000
|
Hsc_gene_14178.t1
|
Hsc_gene_14178.t1
|
— |
P47815.2 Eukaryotic translation initiation factor 1A [Triticum aestivum]
|
KAH7729322.1 protein synthesis factor [Aphelenchus avenae]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003743|GO:0006413
|
GO:0005575_0.790|GO:0110165_0.790|GO:0003674_0.696|GO:0005488_0.696|GO:0005622_0.652|GO:0005737_0.562|GO:0008150_0.517|GO:0043226_0.514
|
IPR001253+1-140_14-111_16-111_28-111_34-110+|IPR006196+22-97_34-94+|IPR012340+2-141_2-166+|IPR018104+42-64+
|
SM00652+28-111+
|
PF01176+34-94+Translation_initiation_factor_1A_/_IF-1
|
— |
PTHR21668+1-140+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-32;96-166
|
1.000
|
33-95
|
9kn6_1A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.550
|
18821.780
|
4.646
|
-7.500
|
39.157
|
5.422
|
59.036
|
40.964
|
17.470
|
21.687
|
46.386
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
4309.866
|
2125.488
|
1890.377
|
3446.718
|
4094.089
|
3780.200
|
2509.256
|
2593.837
|
7682.104
|
5429.098
|
6394.672
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.397
|
0.560
|
0.974
|
0.216
|
— |
-0.581
|
-0.648
|
— | — | — | — | — | — |
No JSON data available for plots.