Hg_chrom5_TN10mRNA_10617
Organism: Heterodera glycines Gene Locus: chr5:8754231-8758488 Feature type: polypeptideProtein Sequence
Length: 479
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.092 | 0.777 | 0.797 | 0.216 | 1.427 | 2.569 | 0.646 | 1.148 | 0.881 | 1.157 | 0.917 | 1.596 | 1.16 | 1.004 | 1.704 | 0.716 | 0.89 | 0.633 | 0.321 | 0.553 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9995
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.718
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKKKLDNKFKKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.295
|
0.291
|
0.044
|
0.622
|
0.138
|
0.232
|
0.349
|
0.044
|
0.122
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009982
|
1.000
|
1.000
|
Hsc_gene_14177.t1
|
— | — |
Q9BZV1.1 UBX domain-containing protein 6 [Homo sapiens]
|
KAI6226365.1 UBX domain-containing protein 6 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.952|GO:0005575_0.854|GO:0110165_0.846|GO:0005622_0.817|GO:0016020_0.714|GO:0043226_0.694|GO:0043229_0.680|GO:0009987_0.658|GO:0043227_0.648|GO:0005737_0.639|GO:0043231_0.620|GO:0071944_0.563|GO:0008152_0.537|GO:0044238_0.530|GO:0043170_0.524
|
IPR001012+366-447_370-445+|IPR018997+192-272+|IPR029071+347-447+|IPR036339+171-289+|IPR042774+183-288+
|
SM00580+196-270+
|
PF00789+370-445+UBX_domain|PF09409+192-272+PUB_domain
|
— |
PTHR23153+4-473+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-152
|
1.000
|
153-479
|
6sap_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
54577.750
|
9.509
|
12.500
|
29.645
|
8.768
|
53.445
|
46.555
|
16.701
|
12.944
|
43.006
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
1533.444
|
1406.040
|
1113.050
|
1330.544
|
1814.228
|
2296.931
|
2264.650
|
1664.068
|
1851.204
|
861.845
|
1285.856
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.566
|
-0.217
|
0.366
|
0.415
|
0.355
|
— |
-0.570
|
0.588
|
— | — | — | — | — |
No JSON data available for plots.