Hg_chrom5_TN10mRNA_10622
Organism: Heterodera glycines Gene Locus: chr5:8782004-8783426 Feature type: polypeptideProtein Sequence
Length: 106
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.768 | 0.658 | 1.029 | 1.301 | 0.629 | 1.209 | 0.786 | 1.415 | 1.677 | 1.275 | 0.858 | 1.665 | 2.358 | 0.726 | 0.963 | 0.809 | 1.083 | 0.572 | 0.726 | 1.11 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10000
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.136
|
0.058
|
0.015
|
0.329
|
0.362
|
0.798
|
0.518
|
0.008
|
0.388
|
0.260
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003872
|
2.000
|
1.000
|
Hsc_gene_24341.t1
|
— | — | — |
KAI1730883.1 neuropeptide-like peptide 36 [Ditylenchus destructor]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
PF21525+5-51+Neuropeptide-like_peptide_36
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-106
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.643
|
12088.000
|
7.699
|
2.500
|
22.642
|
16.038
|
42.453
|
57.547
|
13.208
|
9.434
|
45.283
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
802.693
|
190.424
|
1179.287
|
498.572
|
649.268
|
802.675
|
497.568
|
1932.105
|
51.191
|
1317.175
|
774.611
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.403
|
1.251
|
-1.134
|
0.349
|
0.321
|
-0.682
|
1.167
|
-1.818
|
-4.804
|
— | — | — | — |
No JSON data available for plots.