Hg_chrom5_TN10mRNA_10645
Organism: Heterodera glycines Gene Locus: chr5:8931433-8933049 Feature type: polypeptideProtein Sequence
Length: 372
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.688 | 1.063 | 0.929 | 0.742 | 1.344 | 0.827 | 0.544 | 1.075 | 1.732 | 1.417 | 1.1 | 2.056 | 2.091 | 1.034 | 0.713 | 0.768 | 0.617 | 0.896 | 1.034 | 0.712 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10023
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRFDYYVDEHFKTRKW
|
— | — | — | — | — | — |
0.000
|
— | — |
0.588
|
0.261
|
0.084
|
0.591
|
0.177
|
0.070
|
0.123
|
0.022
|
0.207
|
0.233
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000041
|
16.000
|
9.000
|
Hsc_gene_17416.t1;Hsc_gene_17666.t1;Hsc_gene_26293.t1;Hsc_gene_26326.t1;Hsc_gene_26331.t1;Hsc_gene_26377.t1;Hsc_gene_26378.t1;Hsc_gene_26384.t1;Hsc_gene_706.t2
|
Hsc_gene_19525.t1
|
— | — |
KAI3411176.1 hypothetical protein GPALN_003259 [Globodera pallida]
|
WP_157968120
|
0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-372
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
42703.710
|
5.477
|
-5.000
|
26.075
|
13.441
|
43.011
|
56.989
|
12.903
|
13.172
|
42.742
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
1404.307
|
2962.892
|
1356.782
|
1249.890
|
1362.856
|
1260.994
|
1078.129
|
1777.585
|
1103.099
|
1173.094
|
1143.097
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.357
|
-1.382
|
— |
0.093
|
— |
-0.218
|
0.395
|
-0.583
|
— | — | — | — | — |
No JSON data available for plots.