Hg_chrom5_TN10mRNA_10646
Organism: Heterodera glycines Gene Locus: chr5:8933330-8936117 Feature type: polypeptideProtein Sequence
Length: 219
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.372 | 0.743 | 1.079 | 0.157 | 0.761 | 0.117 | 1.25 | 2.055 | 0.304 | 0.494 | 0.761 | 0.806 | 0.888 | 0.966 | 3.821 | 2.218 | 0.599 | 0.969 | 0.0 | 1.074 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10024
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RREISPKRRARSRSRSR,HRHVRKSFSRSPVRNNRSRTRSRSRS
|
58-94
|
0.982
|
— | — | — | — |
0.000
|
— | — |
0.936
|
0.039
|
0.016
|
0.132
|
0.044
|
0.021
|
0.018
|
0.002
|
0.071
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001803
|
2.000
|
2.000
|
Hsc_gene_26373.t2;Hsc_gene_9190.t1
|
Hsc_gene_26373.t1;Hsc_gene_26373.t2;Hsc_gene_9190.t1
|
— |
Q13595.1 Transformer-2 protein homolog alpha [Homo sapiens]
|
KAI3421179.1 transformer 2 beta [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.855|GO:0110165_0.851|GO:0008150_0.850|GO:0005622_0.795|GO:0043226_0.737|GO:0043229_0.734|GO:0016020_0.715|GO:0043227_0.674|GO:0043231_0.674|GO:0008152_0.642|GO:0043170_0.642|GO:0044238_0.617|GO:0009987_0.609|GO:0003674_0.604|GO:0065007_0.560|GO:0009058_0.555|GO:0006139_0.550|GO:0005488_0.549|GO:0090304_0.546|GO:0050789_0.544|GO:0016070_0.543|GO:0044237_0.542|GO:0044249_0.542|GO:0009059_0.541|GO:0010467_0.541|GO:0005634_0.531
|
IPR000504+103-181_104-177_111-174+|IPR012677+2-193+|IPR035979+56-179+|IPR050441+57-213+
|
SM00360+104-177+
|
PF00076+111-174+RNA_recognition_motif
|
— |
PTHR48034+57-213+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-118;180-219
|
1.000
|
119-179
|
2rra_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
24892.550
|
11.940
|
33.500
|
38.356
|
10.959
|
61.187
|
38.813
|
27.854
|
10.502
|
53.881
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
1992.779
|
2875.003
|
2588.733
|
2187.617
|
2223.957
|
1728.287
|
1691.390
|
2302.849
|
1589.811
|
1676.861
|
1639.554
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.382
|
-0.531
|
-0.134
|
— |
-0.349
|
— |
0.308
|
-0.302
|
— | — | — | — | — |
No JSON data available for plots.