SCN Proteipedia

Hg_chrom5_TN10mRNA_10649

Organism: Heterodera glycines Gene Locus: chr5:8947766-8958697 Feature type: polypeptide

Protein Sequence

Length: 1,258

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.072	1.313	0.593	0.685	0.689	2.201	0.681	1.471	0.83	1.214	0.735	1.216	0.773	1.223	1.087	1.385	1.003	0.831	0.673	0.655	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10027	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Not_Clustered	0.715

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRMMRWVEPDKPIRR,KRDRTQSANSENGWTKKLR	—	—	—	—	—	—	0.000	—	—	0.251	0.187	0.041	0.694	0.162	0.184	0.207	0.031	0.501	0.077

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009987	1.000	1.000	Hsc_gene_26359.t1	Hsc_gene_26359.t1;Hsc_gene_26368.t1	—	Q62130.2 Tyrosine-protein phosphatase non-receptor type 14 [Mus musculus]	KAF7636560.1 Tyrosine-protein phosphatase domain-containing protein, partial [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004725\|GO:0005856\|GO:0006470\|GO:0016311	GO:0008150_0.834\|GO:0005575_0.818\|GO:0110165_0.818\|GO:0009987_0.762\|GO:0003674_0.749\|GO:0016020_0.718\|GO:0065007_0.658\|GO:0050789_0.646\|GO:0050794_0.635\|GO:0032501_0.589\|GO:0071944_0.550\|GO:0032502_0.549\|GO:0048856_0.549\|GO:0043226_0.545\|GO:0005622_0.532\|GO:0005886_0.531\|GO:0005488_0.521\|GO:0003824_0.514\|GO:0140096_0.514\|GO:0007275_0.503	IPR000242+885-1251_888-1253_914-1083_942-949_961-981_1050-1067_1095-1248_1218-1233_1234-1244+\|IPR000299+24-320+\|IPR000387+1177-1242+\|IPR003595+1051-1250+\|IPR011993+229-313+\|IPR014352+116-227+\|IPR018979+32-95+\|IPR019748+121-234_126-226+\|IPR019749+20-234+\|IPR029021+871-1252_875-1256+\|IPR035963+117-224+	SM00194+888-1253+\|SM00295+20-234+\|SM00404+1051-1250+	PF00102+914-1083_1095-1248+Protein-tyrosine_phosphatase\|PF00373+121-234+FERM_central_domain\|PF09379+32-95+FERM_N-terminal_domain	—	PTHR45706+893-1249+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	485-894;1073-1186	3.000	1-484;895-1072;1187-1258	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.935	137981.970	9.618	53.500	20.509	8.824	50.556	49.444	13.116	7.393	53.498

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	grey	1143.427	1383.991	639.593	882.601	1045.746	1584.703	858.264	2574.370	450.792	1300.923	936.581

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.341	-0.786	0.571	0.213	0.613	-0.874	0.604	-1.446	—	—	—	—	—

No JSON data available for plots.

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