Hg_chrom5_TN10mRNA_10650
Organism: Heterodera glycines Gene Locus: chr5:8965996-8970134 Feature type: polypeptideProtein Sequence
Length: 382
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.913 | 0.731 | 0.381 | 0.361 | 0.742 | 1.007 | 0.935 | 2.094 | 1.745 | 1.521 | 0.793 | 0.77 | 2.545 | 0.554 | 1.122 | 0.898 | 0.858 | 0.793 | 1.41 | 1.078 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10028
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.957
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
KRRGGGGFGAKTKRKGA,GGGKRRGGGGFGAKTKRKG
|
6-54
|
0.715
|
— | — | — | — |
0.000
|
— | — |
0.204
|
0.100
|
0.004
|
0.107
|
0.922
|
0.169
|
0.467
|
0.001
|
0.194
|
0.005
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009988
|
1.000
|
1.000
|
Hsc_gene_26355.t1
|
Hsc_gene_26355.t1
|
— |
Q6DED0.1 Translocating chain-associated membrane protein 1-like 1 [Xenopus laevis]
|
KAF7636558.1 TLC domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006616|GO:0016020
|
GO:0008150_0.941|GO:0009987_0.896|GO:0051179_0.787|GO:0051234_0.782|GO:0005575_0.741|GO:0110165_0.738|GO:0051641_0.667|GO:0033036_0.653|GO:0008104_0.648|GO:0070727_0.648|GO:0045184_0.647|GO:0051668_0.642|GO:0072657_0.640|GO:0033365_0.636|GO:0090150_0.633|GO:0005622_0.600|GO:0008152_0.523|GO:0016020_0.512|GO:0009058_0.504
|
IPR006634+122-335_123-324+|IPR016447+13-344+
|
SM00724+122-335+
|
PF03798+123-324+TLC_domain
|
— |
PTHR12371+13-344+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
345-382
|
1.000
|
1-344
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
43537.700
|
10.146
|
24.000
|
21.466
|
18.848
|
40.052
|
59.948
|
14.921
|
6.545
|
41.623
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
tan
|
1705.876
|
1580.707
|
1461.955
|
1831.836
|
2010.064
|
3192.327
|
1305.684
|
1426.167
|
2833.486
|
534.814
|
1519.959
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.342
|
— |
0.434
|
— |
0.683
|
-1.283
|
-1.262
|
— |
2.285
|
— | — | — | — |
No JSON data available for plots.