Hg_chrom5_TN10mRNA_10653
Organism: Heterodera glycines Gene Locus: chr5:8975172-8976480 Feature type: polypeptideProtein Sequence
Length: 345
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.843 | 0.944 | 1.107 | 0.3 | 0.966 | 0.52 | 0.656 | 1.014 | 1.997 | 1.293 | 1.274 | 1.535 | 2.335 | 1.171 | 1.065 | 0.87 | 0.618 | 0.791 | 0.892 | 0.256 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10031
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.728
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRPIGAGGGKKWKKEIKK,KKWKKEIKKAVGRKKNKI,RPIGAGGGKKWKKEIKKAVGRKKNK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.659
|
0.256
|
0.043
|
0.539
|
0.097
|
0.060
|
0.066
|
0.015
|
0.235
|
0.249
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009990
|
1.000
|
1.000
|
Hsc_gene_26347.t1
|
— | — | — |
KAI3407466.1 hypothetical protein GPALN_016234 [Globodera pallida]
|
XP_025435463
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;340-345
|
1.000
|
3-339
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
39062.620
|
9.557
|
9.500
|
27.536
|
12.464
|
43.478
|
56.522
|
15.652
|
11.884
|
44.928
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
63.001
|
24.221
|
57.821
|
31.141
|
77.977
|
70.168
|
42.153
|
70.008
|
4.146
|
132.459
|
77.468
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.023
|
— |
-0.781
|
1.294
|
— |
-0.727
|
— |
-0.591
|
-5.198
|
— | — | — | — |
No JSON data available for plots.