Hg_chrom5_TN10mRNA_10656
Organism: Heterodera glycines Gene Locus: chr5:8983485-8985562 Feature type: polypeptideProtein Sequence
Length: 358
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.78 | 0.974 | 0.457 | 0.578 | 0.559 | 0.859 | 0.399 | 0.978 | 1.862 | 2.038 | 0.593 | 1.15 | 2.561 | 0.645 | 0.912 | 0.918 | 0.916 | 1.185 | 0.859 | 1.643 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10034
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRSR
|
46-94
|
0.772
|
— | — | — | — |
0.000
|
— | — |
0.108
|
0.030
|
0.034
|
0.128
|
0.436
|
0.229
|
0.201
|
0.068
|
0.792
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009991
|
1.000
|
1.000
|
Hsc_gene_19848.t1
|
Hsc_gene_19848.t1
|
— | — |
CAD2192617.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR019408+46-341+|IPR053286+28-340+
|
— |
PF10292+46-341+Serpentine_type_7TM_GPCR_receptor_class_ab_chemoreceptor
|
— |
PTHR46561+28-340+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-358
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.693
|
41370.050
|
9.259
|
12.500
|
16.201
|
17.877
|
35.754
|
64.246
|
10.335
|
5.866
|
41.620
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
10.197
|
8.866
|
32.871
|
18.309
|
10.980
|
7.696
|
25.942
|
6.874
|
0.000
|
2.785
|
1.591
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.662
|
0.909
|
-0.735
|
-0.774
|
— | — | — |
2.055
|
— |
5.051
|
— | — | — |
No JSON data available for plots.