Hg_chrom5_TN10mRNA_10658
Organism: Heterodera glycines Gene Locus: chr5:8990728-8997418 Feature type: polypeptideProtein Sequence
Length: 326
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.499 | 1.498 | 0.781 | 0.212 | 1.227 | 0.551 | 0.949 | 1.687 | 1.227 | 1.244 | 0.79 | 1.083 | 1.704 | 1.18 | 1.315 | 0.789 | 0.805 | 1.162 | 0.708 | 1.173 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10036
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
extracellular
|
— | — | — | — | — | — |
1-26
|
0.986
|
1.000
|
0.000
|
0.000
|
0.399
|
0.286
|
0.053
|
0.406
|
0.235
|
0.360
|
0.094
|
0.005
|
0.425
|
0.747
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009992
|
1.000
|
1.000
|
Hsc_gene_26341.t1
|
Hsc_gene_26341.t1
|
— |
O44126.1 32 kDa beta-galactoside-binding lectin [Haemonchus contortus]
|
AVA09689.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030246
|
GO:0008150_0.730|GO:0005575_0.722|GO:0110165_0.699|GO:0009987_0.597|GO:0003674_0.526|GO:0016020_0.506
|
IPR001079+53-187_54-182_54-187_55-190_59-186_194-323_195-321_196-323_201-322_204-321+|IPR013320+52-189_193-322+|IPR044156+48-182+
|
SM00276+53-187_194-323+|SM00908+59-186_201-322+
|
PF00337+54-182_204-321+Galactoside-binding_lectin
|
— |
PTHR11346+48-182+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-326
|
8hl9_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
37121.310
|
7.596
|
5.500
|
26.687
|
14.417
|
45.706
|
54.294
|
15.031
|
11.656
|
47.853
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
925.918
|
1297.859
|
2312.220
|
526.169
|
127.364
|
647.606
|
66.543
|
3824.425
|
108.674
|
668.567
|
428.613
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
-1.440
|
-2.028
|
-2.079
|
2.361
|
-3.270
|
2.458
|
-5.699
|
— | — | — | — | — |