Hg_chrom5_TN10mRNA_10661
Organism: Heterodera glycines Gene Locus: chr5:9013431-9015092 Feature type: polypeptideProtein Sequence
Length: 278
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 0.837 | 0.785 | 0.372 | 0.42 | 1.752 | 0.856 | 0.719 | 0.32 | 0.875 | 2.017 | 0.846 | 1.799 | 2.214 | 0.514 | 1.336 | 1.002 | 0.872 | 0.277 | 0.423 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10039
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— |
KPQRGTGKKGPAPPVVKKPPPSKTKPPEKGKKVPPQPPSKKRPRQMGNK
|
— | — |
19-59
|
0.948
|
— | — |
0.000
|
— | — |
0.172
|
0.055
|
0.020
|
0.375
|
0.175
|
0.211
|
0.162
|
0.004
|
0.429
|
0.308
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000878
|
2.000
|
4.000
|
Hsc_gene_17418.t1;Hsc_gene_21510.t1;Hsc_gene_26335.t1;Hsc_gene_26335.t2
|
— | — | — | — |
HOY47472
|
0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR004296+253-278+
|
— |
PF03057+253-278+DUF236_repeat
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
85-278
|
1.000
|
1-84
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
30242.730
|
10.758
|
27.000
|
24.101
|
9.712
|
50.000
|
50.000
|
17.266
|
6.835
|
55.755
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
390.332
|
2.419
|
15.501
|
19.735
|
83.104
|
995.284
|
48.257
|
1207.240
|
0.000
|
818.375
|
467.643
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.440
|
2.883
|
— |
2.044
|
3.596
|
-4.354
|
— |
-4.494
|
-10.463
|
5.160
|
— | — | — |
No JSON data available for plots.