SCN Proteipedia

Hg_chrom5_TN10mRNA_10666

Organism: Heterodera glycines Gene Locus: chr5:9038809-9040339 Feature type: polypeptide

Protein Sequence

Length: 370

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.44	0.44	0.835	0.839	0.991	1.04	0.804	1.351	1.021	1.315	0.655	1.59	0.976	1.507	1.489	1.197	1.595	0.942	1.871	0.318	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10044	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-Not_Clustered	0.889

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	51-86	0.839	—	—	—	—	0.000	—	—	0.350	0.348	0.076	0.472	0.279	0.258	0.301	0.037	0.224	0.268

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003009	2.000	1.000	Hsc_gene_4303.t1	Hsc_gene_4285.t1;Hsc_gene_4290.t1;Hsc_gene_4303.t1	—	Q9VK45.1 Serine/threonine-protein kinase mTor [Drosophila melanogaster]	KAH7731948.1 Protein MAM-1 [Aphelenchus avenae]	No	-0.440

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.949\|GO:0005575_0.916\|GO:0110165_0.909\|GO:0065007_0.890\|GO:0050789_0.878\|GO:0005622_0.828\|GO:0009987_0.827\|GO:0050896_0.817\|GO:0050794_0.794\|GO:0005737_0.740\|GO:0003674_0.732\|GO:0051716_0.727\|GO:0008152_0.707\|GO:0043170_0.707\|GO:0044238_0.703\|GO:0007154_0.702\|GO:0023052_0.702\|GO:0019222_0.697\|GO:0031323_0.693\|GO:0044237_0.693\|GO:0009058_0.692\|GO:0048519_0.691\|GO:0060255_0.689\|GO:0016043_0.685\|GO:0071840_0.685\|GO:0007165_0.684\|GO:0080090_0.677\|GO:0048523_0.676\|GO:0016020_0.668\|GO:0048518_0.653\|GO:0048522_0.641\|GO:0009892_0.636\|GO:0035556_0.632\|GO:0031324_0.629\|GO:0032991_0.626\|GO:0043226_0.620\|GO:0044249_0.615\|GO:0009059_0.612\|GO:0006139_0.608\|GO:0010467_0.608\|GO:0043229_0.603\|GO:0003824_0.570\|GO:0140096_0.556\|GO:0016740_0.553\|GO:0140535_0.549\|GO:0038201_0.540\|GO:0016772_0.536\|GO:0009893_0.535\|GO:0031929_0.535\|GO:0016301_0.534\|GO:0016773_0.534\|GO:0004672_0.533\|GO:0009889_0.532\|GO:0042221_0.532\|GO:0031325_0.531\|GO:0031326_0.530\|GO:0010604_0.528\|GO:0016070_0.528\|GO:0032502_0.528\|GO:0048856_0.528\|GO:0090304_0.528\|GO:0019538_0.527\|GO:0010556_0.526\|GO:0043227_0.526\|GO:0071944_0.526\|GO:0019219_0.518\|GO:0051252_0.516\|GO:0043231_0.508\|GO:0006996_0.505\|GO:0005488_0.504\|GO:0009056_0.502	IPR003152+338-370_344-370+	SM01343+338-370+	PF02260+344-370+FATC_domain	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	163-235	2.000	1-162;236-370	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.828	41511.590	8.248	9.000	24.865	9.730	48.919	51.081	14.324	10.541	51.622

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	pink	198.797	8.107	7.725	27.092	65.399	21.459	36.749	20.144	186.671	659.728	456.989

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	1.603	1.918	1.237	-1.592	0.787	—	1.009	—	—	—	—	—

No JSON data available for plots.

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