Hg_chrom5_TN10mRNA_10674
Organism: Heterodera glycines Gene Locus: chr5:9073178-9075450 Feature type: polypeptideProtein Sequence
Length: 325
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.109 | 1.145 | 1.399 | 0.743 | 1.128 | 1.499 | 0.586 | 2.154 | 0.821 | 1.414 | 0.839 | 1.81 | 1.197 | 0.71 | 1.193 | 0.747 | 0.757 | 0.746 | 0.237 | 0.633 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10051
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.747
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.473
|
0.603
|
0.114
|
0.525
|
0.028
|
0.087
|
0.025
|
0.033
|
0.054
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001727
|
3.000
|
1.000
|
Hsc_gene_26314.t1
|
Hsc_gene_26312.t1;Hsc_gene_26312.t2;Hsc_gene_26314.t1
|
— |
B2VG45.1 3'-5' ssDNA/RNA exonuclease TatD [Erwinia tasmaniensis Et1/99]
|
KAI1719833.1 orotidine 5'-phosphate decarboxylase / HUMPS family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016788
|
GO:0005575_0.791|GO:0110165_0.789|GO:0005622_0.705|GO:0008150_0.632|GO:0003674_0.559|GO:0016020_0.510
|
IPR001130+1-297_11-293_12-293+|IPR032466+11-294+|IPR050891+3-303+
|
— |
PF01026+12-293+TatD_related_DNase
|
G3DSA:3.20.20.140:FF:000005+10-295+TatD_family_hydrolase
|
PTHR10060+3-303+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
286-325
|
1.000
|
1-285
|
3rcm_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.647
|
36683.440
|
6.142
|
-3.000
|
30.154
|
11.077
|
50.769
|
49.231
|
15.692
|
14.462
|
47.692
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
186.243
|
60.050
|
87.846
|
149.160
|
202.783
|
225.018
|
334.651
|
169.464
|
137.047
|
251.163
|
202.256
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.176
|
0.871
|
0.411
|
— |
0.585
|
-0.519
|
1.128
|
— | — | — | — | — |
No JSON data available for plots.