Hg_chrom5_TN10mRNA_10677
Organism: Heterodera glycines Gene Locus: chr5:9107931-9109399 Feature type: polypeptideProtein Sequence
Length: 299
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.778 | 1.011 | 1.216 | 0.577 | 0.613 | 0.772 | 0.717 | 1.839 | 1.486 | 1.401 | 0.557 | 1.18 | 1.394 | 1.351 | 1.365 | 0.717 | 0.877 | 1.267 | 0.772 | 0.885 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10054
|
— | — |
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.656
|
0.156
|
0.148
|
0.754
|
0.153
|
0.247
|
0.117
|
0.013
|
0.106
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000188
|
10.000
|
1.000
|
Hsc_gene_12385.t1
|
— | — |
P91420.1 Serine/threonine-protein phosphatase PP1-delta [Caenorhabditis elegans]
|
KAF7639056.1 Serine/threonine-protein phosphatase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0008150_0.826|GO:0003674_0.799|GO:0005575_0.768|GO:0110165_0.768|GO:0009987_0.751|GO:0003824_0.685|GO:0005622_0.664|GO:0016020_0.593|GO:0005737_0.585|GO:0016787_0.583|GO:0140096_0.570|GO:0065007_0.564|GO:0016788_0.559|GO:0042578_0.546|GO:0016791_0.545|GO:0050789_0.544|GO:0004721_0.541|GO:0050794_0.539
|
IPR004843+54-253+|IPR006186+26-299_54-81_83-110_116-140_117-122_154-180_184-211_241-261_263-279+|IPR029052+6-298_21-298+|IPR050341+25-289+
|
SM00156+26-299+
|
PF00149+54-253+Calcineurin-like_phosphoesterase
|
— |
PTHR11668+25-289+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-299
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.702
|
33617.780
|
7.507
|
5.500
|
24.415
|
12.709
|
42.140
|
57.860
|
14.047
|
10.368
|
51.171
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
866.006
|
0.616
|
2.586
|
8.870
|
50.234
|
2316.283
|
62.517
|
6175.803
|
0.000
|
557.436
|
318.535
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
3.718
|
1.871
|
2.475
|
5.539
|
-5.199
|
1.300
|
-6.477
|
-8.128
|
— | — | — |
9.456
|
No JSON data available for plots.