Hg_chrom5_TN10mRNA_10685
Organism: Heterodera glycines Gene Locus: chr5:9149812-9157424 Feature type: polypeptideProtein Sequence
Length: 678
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.463 | 0.72 | 0.885 | 0.814 | 0.762 | 0.87 | 0.404 | 1.327 | 1.344 | 1.395 | 0.648 | 1.648 | 1.024 | 1.276 | 1.023 | 1.812 | 1.136 | 1.207 | 1.475 | 0.998 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10061
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.901
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRRR
|
24-57
|
0.784
|
93-119
|
0.992
|
— | — |
0.000
|
— | — |
0.062
|
0.066
|
0.012
|
0.150
|
0.289
|
0.209
|
0.286
|
0.014
|
0.783
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010002
|
1.000
|
1.000
|
Hsc_gene_26309.t1
|
Hsc_gene_26309.t1
|
— |
Q9N587.2 Acetylcholine receptor subunit alpha-type unc-63 [Caenorhabditis elegans]
|
KAI1712800.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0022848|GO:0034220|GO:0045211
|
GO:0005575_0.957|GO:0110165_0.957|GO:0071944_0.910|GO:0005886_0.887|GO:0016020_0.887|GO:0008150_0.881|GO:0009987_0.866|GO:0065007_0.839|GO:0050789_0.811|GO:0007154_0.791|GO:0023052_0.787|GO:0051179_0.767|GO:0006810_0.765|GO:0051234_0.765|GO:0055085_0.749|GO:0030054_0.747|GO:0045202_0.739|GO:0050896_0.730|GO:0007267_0.727|GO:0098916_0.727|GO:0099536_0.727|GO:0099537_0.727|GO:0007268_0.724|GO:0006811_0.703|GO:0050794_0.699|GO:0034220_0.697|GO:0003674_0.675|GO:0005215_0.666|GO:0022857_0.666|GO:0015267_0.663|GO:0022803_0.663|GO:0005216_0.647|GO:0015075_0.647|GO:0051716_0.639|GO:0022836_0.624|GO:0060089_0.619|GO:0098590_0.617|GO:0038023_0.612|GO:0007165_0.611|GO:0032501_0.591|GO:0006812_0.590|GO:0098655_0.587|GO:0003008_0.571|GO:0022834_0.557|GO:0015276_0.544|GO:0097060_0.541|GO:0065008_0.531|GO:0008324_0.528|GO:0005261_0.525|GO:0098794_0.522|GO:0050877_0.517|GO:0045211_0.515|GO:0007166_0.514|GO:0030594_0.503
|
IPR002394+189-205_223-237_241-253_259-277+|IPR006029+393-659+|IPR006201+160-538_202-218_235-246_279-293_380-392+|IPR006202+156-386+|IPR018000+279-293+|IPR036719+386-669+|IPR036734+147-391_154-385+|IPR038050+392-502_584-669+
|
— |
PF02931+156-386+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+393-659+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:1.20.58.390:FF:000012+392-503+Acetylcholine_receptor_subunit_alpha-like|G3DSA:1.20.58.390:FF:000022+597-673+Nicotinic_acetylcholine_receptor_subunit_alpha4|G3DSA:2.70.170.10:FF:000013+147-391+Acetylcholine_receptor_subunit_alpha
|
PTHR18945+160-538+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
510-565;677-678
|
2.000
|
1-509;566-676
|
8st0_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
76409.880
|
7.315
|
8.000
|
21.386
|
11.652
|
47.493
|
52.507
|
11.947
|
9.440
|
51.917
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
323.473
|
250.044
|
938.054
|
359.046
|
119.352
|
229.847
|
104.662
|
533.777
|
31.546
|
440.993
|
265.515
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.679
|
0.385
|
-1.277
|
-1.620
|
0.960
|
-1.126
|
1.114
|
-2.210
|
-3.918
|
— | — | — | — |
No JSON data available for plots.