Hg_chrom5_TN10mRNA_10688
Organism: Heterodera glycines Gene Locus: chr5:9167312-9173460 Feature type: polypeptideProtein Sequence
Length: 720
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.953 | 1.421 | 1.162 | 0.67 | 0.949 | 2.03 | 0.761 | 1.181 | 0.463 | 1.032 | 0.821 | 1.471 | 1.003 | 0.935 | 1.474 | 1.012 | 1.161 | 0.715 | 0.321 | 0.694 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10064
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRPSPATLFDQISKKVPR,GGKKLSKKAKRREERARQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.510
|
0.253
|
0.005
|
0.666
|
0.181
|
0.174
|
0.247
|
0.023
|
0.121
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010005
|
1.000
|
1.000
|
Hsc_gene_26305.t1
|
— | — |
E9QG68.1 Ubiquitin carboxyl-terminal hydrolase 45 [Danio rerio]
|
KJH50782.1 ubiquitinyl hydrolase 1 [Dictyocaulus viviparus]
|
No
|
-0.400
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0016579
|
GO:0008150_0.961|GO:0005575_0.719|GO:0110165_0.716|GO:0009987_0.689|GO:0003674_0.649|GO:0008152_0.627|GO:0043170_0.627|GO:0065007_0.617|GO:0044238_0.615|GO:0005622_0.613|GO:0016020_0.610|GO:0050789_0.605|GO:0050794_0.564|GO:0043226_0.542|GO:0043229_0.531
|
IPR001394+128-564+|IPR018200+128-143_542-559+|IPR028889+127-719+|IPR038765+124-718+|IPR050185+54-718+
|
— |
PF00443+128-564+Ubiquitin_carboxyl-terminal_hydrolase
|
— |
PTHR21646+54-718+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-135;262-342;440-486;605-683
|
4.000
|
136-261;343-439;487-604;684-720
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
80452.550
|
8.026
|
12.500
|
27.083
|
8.750
|
55.278
|
44.722
|
15.000
|
12.083
|
52.778
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
1129.500
|
1362.967
|
645.365
|
827.665
|
1017.910
|
1949.225
|
1155.706
|
1691.087
|
782.702
|
1110.815
|
970.195
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.309
|
-0.857
|
0.468
|
0.267
|
0.952
|
-0.744
|
— | — | — | — | — | — | — |
No JSON data available for plots.