Hg_chrom5_TN10mRNA_10689
Organism: Heterodera glycines Gene Locus: chr5:9173536-9175094 Feature type: polypeptideProtein Sequence
Length: 212
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.207 | 0.987 | 0.343 | 0.488 | 1.022 | 0.726 | 0.786 | 0.943 | 0.524 | 0.892 | 1.787 | 1.942 | 0.655 | 1.27 | 3.08 | 0.741 | 0.387 | 0.929 | 0.726 | 0.555 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10065
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRIKTWFNQPARKERRRAA,RRVRADKRLKGKREKKAKEAADEGLGKGR
|
34-56
|
0.995
|
50-72
|
0.990
|
— | — |
0.000
|
— | — |
0.302
|
0.116
|
0.051
|
0.650
|
0.383
|
0.065
|
0.181
|
0.001
|
0.104
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010006
|
1.000
|
1.000
|
Hsc_gene_26304.t1
|
Hsc_gene_26304.t1
|
— |
Q90YV5.3 Large ribosomal subunit protein eL13 [Ictalurus punctatus]
|
KAF7636594.1 60S ribosomal protein L13 [Meloidogyne graminicola]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.872|GO:0110165_0.872|GO:0005622_0.772|GO:0043226_0.703|GO:0043229_0.701|GO:0005737_0.630|GO:0008150_0.612|GO:0043228_0.610|GO:0043232_0.610|GO:0005829_0.523|GO:0003674_0.519|GO:0005840_0.502
|
IPR001380+1-206_8-187_46-129+|IPR018256+71-85+
|
— |
PF01294+8-187+Ribosomal_protein_L13e
|
— |
PTHR11722+1-206+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-60;113-212
|
1.000
|
61-112
|
7oyb_L1
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.964
|
24316.520
|
12.050
|
42.000
|
36.792
|
7.075
|
51.415
|
48.585
|
28.774
|
8.019
|
44.811
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
7066.519
|
3826.361
|
5666.533
|
11980.505
|
12930.686
|
10283.729
|
4823.250
|
2654.858
|
6134.668
|
6752.799
|
6487.886
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.338
|
1.510
|
1.188
|
— |
-0.315
|
-1.082
|
-2.062
|
1.006
|
— | — | — | — | — |
No JSON data available for plots.